| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,269,489 – 5,269,602 |
| Length | 113 |
| Max. P | 0.680497 |
| Location | 5,269,489 – 5,269,602 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 71.59 |
| Shannon entropy | 0.50676 |
| G+C content | 0.38280 |
| Mean single sequence MFE | -23.25 |
| Consensus MFE | -10.50 |
| Energy contribution | -11.67 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.680497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5269489 113 - 22422827 UGCCACAUGGCUAUCUCUUUGCCUGGUUUCCAUCUAGAUUCUUGAUUC--GGUGUAAAUCCAAUUAUUUUCGUCUAACCAAAAUUAGACGAAAAAAGCACGAGAUGAUACCCGGA .(((....)))((((((..(((.((((((.((((..((........))--)))).))).)))....(((((((((((......)))))))))))..))).))))))......... ( -29.10, z-score = -2.57, R) >droPer1.super_14 305315 95 - 2168203 ------------UGGACUUUCUCUGGUUU-CAUCUUGAUUCUUGGUUUUGGGUGUAAAUCCAAUUAUUUUUGUCGAACCAAAACAGCG-AAAAAAAAUUCAAGGAACAA------ ------------.(((((......)))))-.....((.(((((((..((((((....))))))...(((((((.(........).)))-)))).....))))))).)).------ ( -16.10, z-score = 0.47, R) >dp4.chrXL_group1e 10859992 96 - 12523060 ------------UGGACUUUCUCUGGUUU-CAUCUUGAUUCUUGGUUUUGGGUGUAAAUCCAAUUAUUUUGGUCUAACCAAAACAGCGAAAAAAAAAUUCAAGGAACAA------ ------------.(((((......)))))-.....((.(((((((..((((((....))))))...((((((.....))))))...............))))))).)).------ ( -17.90, z-score = -0.26, R) >droEre2.scaffold_4690 2626931 112 - 18748788 UGCCACAUGACUAUCUCUUUCCCUGGCCUCCAUCUAGACUCUUGAUUC--GGUGUAAAUCCAAUUAUUUUCGUCUAACCAAAAUUAGACGAAAAAAGCACGGGAUGUAGCCCGG- ......................((((.((.(((((.......(((((.--(((....))).)))))(((((((((((......))))))))))).......))))).)).))))- ( -25.30, z-score = -1.55, R) >droYak2.chrX 18573690 99 + 21770863 UGCAAAAUGACUAUCUCUUACCCUGGCCUCCAUCUAGAUUCUUGAUUC--GGUGUAAAUCCAAUUAUUUUCGUCUAACCAAAAUUAGACGAAAAAAGC-CGG------------- ......................(((((...............(((((.--(((....))).)))))(((((((((((......)))))))))))..))-)))------------- ( -20.80, z-score = -2.72, R) >droSec1.super_4 4697140 113 + 6179234 UGCCACAUGGCUAUCUCUUUGCCUGGUUUCCAUCUAGAUUCUUGAUUC--GGUGUACAUCCAAUUAUUUUCGUCUAACCAAAAUUAGACGAAAAAAACACGAGAUGAUAGCCCGG ........(((((((.......((((.......))))..(((((....--((.......)).....(((((((((((......))))))))))).....))))).)))))))... ( -30.30, z-score = -3.26, R) >consensus UGCCACAUG_CUAUCUCUUUCCCUGGUUUCCAUCUAGAUUCUUGAUUC__GGUGUAAAUCCAAUUAUUUUCGUCUAACCAAAAUUAGACGAAAAAAACACGAGAUGAAA______ ......................((((.......))))..(((((......((.......)).....(((((((((((......))))))))))).....)))))........... (-10.50 = -11.67 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:27 2011