| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,182,380 – 10,182,451 |
| Length | 71 |
| Max. P | 0.996055 |
| Location | 10,182,380 – 10,182,451 |
|---|---|
| Length | 71 |
| Sequences | 5 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 86.65 |
| Shannon entropy | 0.24240 |
| G+C content | 0.45134 |
| Mean single sequence MFE | -21.92 |
| Consensus MFE | -17.96 |
| Energy contribution | -18.64 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.09 |
| Mean z-score | -3.14 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.88 |
| SVM RNA-class probability | 0.996055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10182380 71 + 23011544 GACCUCCUUGUGCACAGUUUACUGUUGCAUCACCAAAGUUGCAGC---CACAAAAUUGUGCAUAAUGUCGUAAU (((....(((((((((((((...((((((.(......).))))))---....))))))))))))).)))..... ( -23.70, z-score = -4.13, R) >droSim1.chr2L 9965187 70 + 22036055 GACCUCCUUGUGCGCAGUUUACUGUUGCAUCCCCAA-GUUGCAGC---CACAGAAUUGUGCAUAAUGUCGUAAU (((....(((((((((((((...((((((.......-..))))))---....))))))))))))).)))..... ( -23.30, z-score = -4.13, R) >droSec1.super_3 5607679 70 + 7220098 GACCUCCUUGUGCGCAGUUUACUGUUGCAUCCCCAA-GUUGCAGC---CACAAAAUUGUGCAUAAUGUCGUAAU (((....(((((((((((((...((((((.......-..))))))---....))))))))))))).)))..... ( -22.90, z-score = -4.39, R) >droYak2.chr2L 12854981 65 + 22324452 GACCUCCUUGUGCGCAGUGUACUGUUGCAUG------GUUGCAGC---CACAAAAUUGUGCAUAAUAUCGUAAU .......(((((((((((.....((((((..------..))))))---......)))))))))))......... ( -20.50, z-score = -2.06, R) >droEre2.scaffold_4929 10787502 74 + 26641161 GACCUCCUUGUGCGCAGUGUACUGUUGCAUAGUUGCACACACAGCUCCCACAAAAUUGUGCAUAAUGUCGUAAU (((....((((((((((((..((((((((....))))...))))....))).....))))))))).)))..... ( -19.20, z-score = -1.00, R) >consensus GACCUCCUUGUGCGCAGUUUACUGUUGCAUCCCCAA_GUUGCAGC___CACAAAAUUGUGCAUAAUGUCGUAAU (((....(((((((((((((...((((((..........)))))).......))))))))))))).)))..... (-17.96 = -18.64 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:48 2011