| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,244,260 – 5,244,310 |
| Length | 50 |
| Max. P | 0.526078 |
| Location | 5,244,260 – 5,244,310 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 98.67 |
| Shannon entropy | 0.01837 |
| G+C content | 0.59333 |
| Mean single sequence MFE | -10.97 |
| Consensus MFE | -10.80 |
| Energy contribution | -10.80 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.526078 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5244260 50 - 22422827 GGGCCCAGUAGCCCAUAGACCAUAGACCAUAUCCGAGGAGUCCGUGCCAG ((((......))))......((..(((....((....)))))..)).... ( -10.80, z-score = -1.05, R) >droSec1.super_4 4671925 50 + 6179234 GGGCCCAGUAGCCCAUAGACCAUAGACCAUAUCCGAGGAGUCCGUGCCAG ((((......))))......((..(((....((....)))))..)).... ( -10.80, z-score = -1.05, R) >droSim1.chrX 4036539 50 - 17042790 GGGCCCAGUAGCCCAUAGACCAUAGACCAUAUCCGAGGAGUCCGUGCUAG ((((......)))).(((..((..(((....((....)))))..))))). ( -11.30, z-score = -0.84, R) >consensus GGGCCCAGUAGCCCAUAGACCAUAGACCAUAUCCGAGGAGUCCGUGCCAG ((((......))))......((..(((....((....)))))..)).... (-10.80 = -10.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:21 2011