| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,228,679 – 5,228,777 |
| Length | 98 |
| Max. P | 0.852987 |
| Location | 5,228,679 – 5,228,777 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 65.27 |
| Shannon entropy | 0.59245 |
| G+C content | 0.59273 |
| Mean single sequence MFE | -37.40 |
| Consensus MFE | -20.96 |
| Energy contribution | -23.00 |
| Covariance contribution | 2.04 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.852987 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5228679 98 - 22422827 ----GUCGGCUUUCGGGAAUCCGGAAUUUCGGGCGCC----------GAGCUGAACGACACGCACGUGUUCUUCGUCCAAGGACUCGCGGACCGUGGA-ACUCUGAGGGCAUC ----....(((((((((..((((......(((...((----------(....(((.(((((....))))).)))(((....)))...))).)))))))-..)))))))))... ( -33.80, z-score = 0.40, R) >droSec1.super_4 4657818 106 + 6179234 ----GUCGGCUUUCGGGACUCCGGAGUUUCGGGAGCGCUGGGCGAC-GAACUGAACGACACGCACGUGUUGUUCGUCCAAGGACUCGCGGACCGAGC--AACUCGAGGACACC ----(((.(((..((..(((....)))..))..)))(((.((((.(-((...(((((((((....)))))))))(((....))))))))..)).)))--........)))... ( -47.70, z-score = -2.24, R) >droYak2.chrX 18533605 109 + 21770863 ----GUCGGCUUUCGGGACUCCGGAGUUUCGGGAGCACUGGGCGACUUAGCUAGGCGACACGCACGUGCUGUUUGUCCAAGGACUCGCGGACCGAUGACGGCUCGAGGACAUC ----(((.(((..((..(((....)))..))..)))..(((((((..((((...(((...)))....)))).)))))))....((((.((.(((....))))))))))))... ( -44.20, z-score = -1.45, R) >droEre2.scaffold_4690 2584121 90 - 18748788 --GGAUUGGCUUUCAAAACUCCAGAGUUUCGGGA--------------------GCGACACGCACGUGUUGUUUGUCCAAGGACUCGCGGACCGAGGA-AACUCGAGGACAUC --((((((.....)))...))).((((((..(((--------------------(((((((....)))))))...)))..))))))..(..(((((..-..)))).)..)... ( -32.00, z-score = -1.67, R) >droAna3.scaffold_13117 2674541 98 - 5790199 GUGGGAUUUUUUUGGGAGCUCUGGAAGCUCUGGGAGAC---------GAGCCAAGAGACACGCACGUGUU----ACCGAAGGCCCAGAGGACUAAGG--GACUCAAGGACUGA .((((....((((((...((((....((((..(....)---------))))..))))((((....)))).----.)))))).))))(((..(....)--..)))......... ( -29.30, z-score = -0.10, R) >consensus ____GUCGGCUUUCGGGACUCCGGAGUUUCGGGAGCAC_________GAGCUAAGCGACACGCACGUGUUGUUCGUCCAAGGACUCGCGGACCGAGGA_AACUCGAGGACAUC ........((((((((((((....))))))))))))................(((((((((....)))))))))(((....)))....(..(((((.....)))).)..)... (-20.96 = -23.00 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:17 2011