| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,193,466 – 5,193,568 |
| Length | 102 |
| Max. P | 0.965816 |
| Location | 5,193,466 – 5,193,568 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 68.25 |
| Shannon entropy | 0.51332 |
| G+C content | 0.44864 |
| Mean single sequence MFE | -27.65 |
| Consensus MFE | -13.16 |
| Energy contribution | -13.72 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.76 |
| SVM RNA-class probability | 0.965816 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5193466 102 - 22422827 CAAAAGGGUGACUGAUUAUUCGAU-GGUUUGGUCGCCAAGCGGUUAAUUCGAAGGAAACCUUAACCCAUGCCAACCCAUCAGCCAAGCUC-AAAAUAAGUGCAU ......(((....((....))(((-((.(((((.((...))(((((((((....)))...))))))...))))).))))).)))..((.(-.......).)).. ( -25.00, z-score = -0.85, R) >droEre2.scaffold_4690 2548490 102 - 18748788 ACACACGGUGACUGAUUAUUCGAUGGGUUAAGACGCCAAGCGGUUAAUUAGAA-GUGGCUGCAAGUAGGAGACAUUAACCCAUGUUGCUC-GAAAAAAAUCCAA .....(((..(((((....)))(((((((((........(((((((.......-.))))))).....(....).)))))))))))..).)-)............ ( -26.80, z-score = -1.53, R) >droSec1.super_4 4619659 96 + 6179234 CCGCACGGUGACUGAUUAUGCGAU-GGUUUGGUCGCCAAGGGGUUAAAUCGAAGGAAACCUUAACCCAUG-------AUCAAACAAGCUCAAAAAAAAGUGCAU ..(((((....).......((...-.(((((((((.....(((((((.((....))....))))))).))-------)))))))..))..........)))).. ( -29.40, z-score = -2.63, R) >droSim1.chrX 4010368 84 - 17042790 CCGCACGGUGACU--------GAU-GAUUUGGUCGCCAAGGGGUUAAAUCGAAGGAAACCUUAACCCAUG----------AACCAAGCUC-AAAAUAUGUGCAU ..((((((((((.--------.(.-...)..))))))...(((((((.((....))....)))))))...----------..........-.......)))).. ( -29.40, z-score = -3.69, R) >consensus CCACACGGUGACUGAUUAUUCGAU_GGUUUGGUCGCCAAGCGGUUAAAUCGAAGGAAACCUUAACCCAUG_______AUCAACCAAGCUC_AAAAAAAGUGCAU ......(((((((((.............)))))))))..((((((...((....)))))))).......................................... (-13.16 = -13.72 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:12 2011