| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,182,700 – 5,182,815 |
| Length | 115 |
| Max. P | 0.552467 |
| Location | 5,182,700 – 5,182,815 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.64 |
| Shannon entropy | 0.30378 |
| G+C content | 0.40407 |
| Mean single sequence MFE | -27.25 |
| Consensus MFE | -17.56 |
| Energy contribution | -18.25 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.552467 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5182700 115 - 22422827 GGACAAAAUGUCCACAUUUUGUGUUU-GCUGUC---UAGCUGAGUUUUCAUUCGGCGACAAAUUGGCUAACUGCUACUCAUUGGAUUUUCUGGGCAACAAAAAAAAAAAAAAAAAACAC ((((.....))))...((((...(((-(.((((---(((((((((....)))))))..(((..((((.....))))....))).......)))))).))))...))))........... ( -26.70, z-score = -2.01, R) >droYak2.chrX 18487204 100 + 21770863 GGACAAAAUGUCCUCAUUUUGCGUUUGGCCGUUCUAUAGCUAAGUUUUCAUUGGACGACAAAGUGGAUAA---CUACUUAUUGGAUUUGCUGGGCCCCAAAAC---------------- ((((.....))))...(((((.(((..((...((((.......(((.((....)).))).((((((....---))))))..))))...))..)))..))))).---------------- ( -23.20, z-score = -0.50, R) >droSec1.super_4 4603856 108 + 6179234 GGACAAAAUGUCCUCAUUUUGCGUUU-GACGUC---UGGCUGAGUUUUCAUUUGGCGACAAAGUGGCUAACUGCUACUCAUUGGAUUUUCUGGGCCUCGAAAAAAAAAAAAC------- ((((.....))))...((((...(((-((.(((---..(..((((((...((((....))))(((((.....))))).....)))))).)..))).)))))...))))....------- ( -28.00, z-score = -1.74, R) >droSim1.chrX 4000531 111 - 17042790 GGACAAAAUGUCCUCAUUUUGCGUUU-GACGUC---UGGCUGAGUUUUCAUUCGGCGACAAAGUGGCUAACUGCUACUCAUUGGAUUUUCUGGGCCUCAAAACAAAAAAAAAAAC---- ((((.....))))...(((((..(((-((.(((---(.(((((((....)))))))..(((((((((.....))))))..)))........)))).))))).)))))........---- ( -31.10, z-score = -2.80, R) >consensus GGACAAAAUGUCCUCAUUUUGCGUUU_GACGUC___UAGCUGAGUUUUCAUUCGGCGACAAAGUGGCUAACUGCUACUCAUUGGAUUUUCUGGGCCUCAAAAAAAAAAAAAA_______ ((((.....))))...(((((.((((.((.........(((((((....)))))))..(((((((((.....))))))..))).....)).))))..)))))................. (-17.56 = -18.25 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:11 2011