| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,139,935 – 5,140,027 |
| Length | 92 |
| Max. P | 0.877653 |
| Location | 5,139,935 – 5,140,027 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 97.10 |
| Shannon entropy | 0.03993 |
| G+C content | 0.51087 |
| Mean single sequence MFE | -21.10 |
| Consensus MFE | -19.23 |
| Energy contribution | -19.57 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.877653 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5139935 92 + 22422827 ACAGUUGUUGAAUAAACAGAGGAAACCGAAGGGACGUUUUGGGGGCAAAACAGGAUAGCGAACGGAUAGGCGUUGGAGGUUAGGUGGCGAUC .(..(((((.....)))))..)...((((((.....))))))..((...((..(((..(.((((......)))).)..)))..)).)).... ( -19.00, z-score = -1.40, R) >droSim1.chrX 3970454 92 + 17042790 ACAGUUGUUGAAUAAACAGGGGAAACCGAAGGGACGUUUUGGGGGCAAAACAGGAUAGCGAACGGAUAGGCGUUGGGGUUUAGGUGGCGAUC ...(((((((..(((((..((....))........((((((....)))))).......(.((((......)))).).)))))..))))))). ( -22.00, z-score = -2.43, R) >droSec1.super_4 4561852 92 - 6179234 ACAGUUGUUGAAUAAACAGGGGAAACCGAAGGGACGUUUUGGGGGCAAAACAGGAUGGCGAACGGAUAGGCGUUGGGGUUUAGGUGGCGAUC ...(((((((..(((((..((....)).......(((((((.........))))))).(.((((......)))).).)))))..))))))). ( -22.30, z-score = -2.28, R) >consensus ACAGUUGUUGAAUAAACAGGGGAAACCGAAGGGACGUUUUGGGGGCAAAACAGGAUAGCGAACGGAUAGGCGUUGGGGUUUAGGUGGCGAUC ...(((((((..(((((........((....))..((((((....)))))).......(.((((......)))).).)))))..))))))). (-19.23 = -19.57 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:09 2011