| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,126,494 – 5,126,564 |
| Length | 70 |
| Max. P | 0.935427 |
| Location | 5,126,494 – 5,126,564 |
|---|---|
| Length | 70 |
| Sequences | 6 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 78.00 |
| Shannon entropy | 0.43101 |
| G+C content | 0.34948 |
| Mean single sequence MFE | -17.42 |
| Consensus MFE | -10.01 |
| Energy contribution | -9.93 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.911918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5126494 70 + 22422827 AAGUUUCAAUUAGUGGGCUUGAUGGUUUAAGCUGACUGUACUCUUGAGUGAAGAGUUUUUAAAACGAAAA ...((((...((((.(((((((....))))))).)))).((((((.....)))))).........)))). ( -19.00, z-score = -2.81, R) >droEre2.scaffold_4690 2481413 70 + 18748788 AAGUUUCAAUUAGUGGGCUUGAUGGUUUAAGCUGGCUGCACUCUUGAGUGAAAAGUUUUGAAAACGCAAA ...((((((.((((.(((((((....))))))).))))((((....)))).......))))))....... ( -19.20, z-score = -1.78, R) >droYak2.chrX 18431617 70 - 21770863 AAGUUUCAAUUAGUGGGCUUGAUGGUUUAAGCUGACUGCACUCUUGAGUGAAAAGUUUUCAGAACGAAAA ...((((...((((.(((((((....))))))).))))((((....))))...............)))). ( -17.60, z-score = -1.42, R) >droSec1.super_4 4548677 70 - 6179234 AAGUUUCAAUUAGUGGGCUUGAUGGUUUAAGCUGACUGCACUCUUGAGUAAAGAGUUUUUAAAACGAAAA ...((((...((((.(((((((....))))))).)))).((((((.....)))))).........)))). ( -19.70, z-score = -2.80, R) >droSim1.chrX 3958678 70 + 17042790 AAGUUUCAAUUAGUGGGCUUGAUGGUUUAAGCUGACUGCACUCUUGAGUGAAGAGUUUUUAAAACGAAAA ...((((...((((.(((((((....))))))).)))).((((((.....)))))).........)))). ( -19.00, z-score = -2.37, R) >dp4.chrXL_group1a 5120715 64 - 9151740 -CGCCUUGAUAUAUGUACGUAUAUAUCUA--UCGAUUA-AUGAUCGAUUGAG--UUUCUGAAGAAUAAAA -...(((((((((((....)))))))).(--((((((.-..)))))))....--......)))....... ( -10.00, z-score = -0.48, R) >consensus AAGUUUCAAUUAGUGGGCUUGAUGGUUUAAGCUGACUGCACUCUUGAGUGAAGAGUUUUUAAAACGAAAA ....(((((.((((.(((((((....))))))).)))).....)))))...................... (-10.01 = -9.93 + -0.08)
| Location | 5,126,494 – 5,126,564 |
|---|---|
| Length | 70 |
| Sequences | 6 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 78.00 |
| Shannon entropy | 0.43101 |
| G+C content | 0.34948 |
| Mean single sequence MFE | -11.13 |
| Consensus MFE | -6.20 |
| Energy contribution | -6.70 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.935427 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5126494 70 - 22422827 UUUUCGUUUUAAAAACUCUUCACUCAAGAGUACAGUCAGCUUAAACCAUCAAGCCCACUAAUUGAAACUU .....(((((((..((((((.....))))))..(((..((((........))))..)))..))))))).. ( -13.40, z-score = -4.07, R) >droEre2.scaffold_4690 2481413 70 - 18748788 UUUGCGUUUUCAAAACUUUUCACUCAAGAGUGCAGCCAGCUUAAACCAUCAAGCCCACUAAUUGAAACUU .......((((((.......((((....))))......((((........)))).......))))))... ( -8.00, z-score = 0.01, R) >droYak2.chrX 18431617 70 + 21770863 UUUUCGUUCUGAAAACUUUUCACUCAAGAGUGCAGUCAGCUUAAACCAUCAAGCCCACUAAUUGAAACUU .(((((..(((...((((((.....)))))).))).).((((........)))).........))))... ( -9.00, z-score = -0.40, R) >droSec1.super_4 4548677 70 + 6179234 UUUUCGUUUUAAAAACUCUUUACUCAAGAGUGCAGUCAGCUUAAACCAUCAAGCCCACUAAUUGAAACUU .....(((((((..((((((.....))))))..(((..((((........))))..)))..))))))).. ( -13.40, z-score = -3.05, R) >droSim1.chrX 3958678 70 - 17042790 UUUUCGUUUUAAAAACUCUUCACUCAAGAGUGCAGUCAGCUUAAACCAUCAAGCCCACUAAUUGAAACUU .....(((((((..((((((.....))))))..(((..((((........))))..)))..))))))).. ( -13.40, z-score = -3.16, R) >dp4.chrXL_group1a 5120715 64 + 9151740 UUUUAUUCUUCAGAAA--CUCAAUCGAUCAU-UAAUCGA--UAGAUAUAUACGUACAUAUAUCAAGGCG- ................--....((((((...-..)))))--).(((((((......)))))))......- ( -9.60, z-score = -1.74, R) >consensus UUUUCGUUUUAAAAACUCUUCACUCAAGAGUGCAGUCAGCUUAAACCAUCAAGCCCACUAAUUGAAACUU .....(((((((..((((((.....))))))..(((..((((........))))..)))..))))))).. ( -6.20 = -6.70 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:06 2011