| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,122,153 – 5,122,244 |
| Length | 91 |
| Max. P | 0.775298 |
| Location | 5,122,153 – 5,122,244 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 88.93 |
| Shannon entropy | 0.18806 |
| G+C content | 0.57838 |
| Mean single sequence MFE | -17.10 |
| Consensus MFE | -17.10 |
| Energy contribution | -17.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.84 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.775298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5122153 91 + 22422827 UGGAGUCCUUAGUGCCCAGCUCGAUGCCACUCGAUGACUCGCCGAAAGCCCGGCCUAAUCCCUGCCAUAUACACUCCCACCAACC-CCAAAC ..(((((.((((((....((.....)))))).)).)))))((((......))))...............................-...... ( -17.10, z-score = -1.18, R) >droSim1.chrX 3954681 92 + 17042790 UGGAGUCCUUAGUGCCCAGCUCGAUGCCACUCGAUGACUCGCCGAAAGCCCGGCCUAAUCCCUGCCAUAUACACUCUCCCAACUCACCCAAC ..(((((.((((((....((.....)))))).)).)))))((((......))))...................................... ( -17.10, z-score = -0.77, R) >droSec1.super_4 4544353 92 - 6179234 UGGAGUCCUUAGUGCCCAGCUCGAUGCCACUCGAUGACUCGCCGAAAGCCCGGCCUAAUCCCUGCCAUAUACACUCUCCCAACUCACCCAAC ..(((((.((((((....((.....)))))).)).)))))((((......))))...................................... ( -17.10, z-score = -0.77, R) >droEre2.scaffold_4690 2477194 76 + 18748788 UGGAGUCCUUAGUGCCCAGCUCGAUGCCACUCGAUGACUCGCCGAAAGCCCGGCCUAAUCCCUGCCAUAUACACUC---------------- ..(((((.((((((....((.....)))))).)).)))))((((......))))......................---------------- ( -17.10, z-score = -0.67, R) >consensus UGGAGUCCUUAGUGCCCAGCUCGAUGCCACUCGAUGACUCGCCGAAAGCCCGGCCUAAUCCCUGCCAUAUACACUCUCCCAACUC_CCCAAC ..(((((.((((((....((.....)))))).)).)))))((((......))))...................................... (-17.10 = -17.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:05 2011