| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,099,584 – 5,099,637 |
| Length | 53 |
| Max. P | 0.881498 |
| Location | 5,099,584 – 5,099,637 |
|---|---|
| Length | 53 |
| Sequences | 6 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 76.23 |
| Shannon entropy | 0.42185 |
| G+C content | 0.43411 |
| Mean single sequence MFE | -16.45 |
| Consensus MFE | -8.07 |
| Energy contribution | -7.99 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.881498 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 5099584 53 - 22422827 AUGUAAAACUUUUAGGGGCUA----ACAUGUAAUGCCCCAUGAAAGGCUGCAUAAAC-- (((((...(((((((((((..----.........))))).))))))..)))))....-- ( -18.20, z-score = -3.35, R) >droEre2.scaffold_4690 2455002 50 - 18748788 UUGU-AAAC-UUC-GGGGCUA----ACAUGUAAUGCCCCAUGAAAGGCUGCAUAAAA-- .(((-(..(-((.-(((((..----.........)))))....)))..)))).....-- ( -13.60, z-score = -1.63, R) >droYak2.chrX 18405697 51 + 21770863 UUGU-AAACUUUU-GGGGCUA----ACAUGUAAUGCGCCAUGAAAGGCUGCAUAAAC-- .(((-(..(((((-((.((..----.........)).)))..))))..)))).....-- ( -11.90, z-score = -1.16, R) >droSec1.super_4 4522791 52 + 6179234 AUGU-AAACUUUUAGGGGCUA----ACAUGUAAUGCCCCAUGAAAGGCUGCAUAAAC-- ((((-(..(((((((((((..----.........))))).))))))..)))))....-- ( -20.10, z-score = -4.17, R) >droSim1.chrX 3932718 52 - 17042790 AUGU-AAACUUUUAGGGGCUA----ACAUGUAAUGCCCCAUGAAAGGCUGCAUAAAC-- ((((-(..(((((((((((..----.........))))).))))))..)))))....-- ( -20.10, z-score = -4.17, R) >droVir3.scaffold_12928 3115715 58 - 7717345 AUGCAAAAUUGUU-GGGGCUGCGGCCCGUUAACUGUUCCCUGUUGCUGUCCCCGGGCAA ........(((((-.(((..(((((.....(((........)))))))).))).))))) ( -14.80, z-score = 1.17, R) >consensus AUGU_AAACUUUU_GGGGCUA____ACAUGUAAUGCCCCAUGAAAGGCUGCAUAAAC__ ..............(((((...............))))).................... ( -8.07 = -7.99 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:04 2011