| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,086,903 – 5,086,994 |
| Length | 91 |
| Max. P | 0.623648 |
| Location | 5,086,903 – 5,086,994 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 79.40 |
| Shannon entropy | 0.40468 |
| G+C content | 0.43607 |
| Mean single sequence MFE | -23.91 |
| Consensus MFE | -15.28 |
| Energy contribution | -17.13 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.623648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5086903 91 + 22422827 AGAGUAGUUAAACAGGGAAACUUAUUUCGUUGCUGUCGCUAAUUUGG---CUCAGCAUCAGCCGCAGCAACAUCUAGCGCAUAAUAAUUGCCUA--- ((.(((((((...(((....))).....((((((((.(((....((.---.....))..))).)))))))).............))))))))).--- ( -24.60, z-score = -1.38, R) >droSim1.chrX 3920362 91 + 17042790 AGAGUAGUUAAACAGGGAAACUUAUUUCGUUGCUGUCGCUAAUUUGG---CUCAGCAUCAGCCGCAGCAACAUCUAGCGCAUAAUAAUUGCCUA--- ((.(((((((...(((....))).....((((((((.(((....((.---.....))..))).)))))))).............))))))))).--- ( -24.60, z-score = -1.38, R) >droSec1.super_4 4510658 90 - 6179234 AGAGUAGUUAAACAGGGAAACUUAUUUCGUUGCUGUCGCUAAUUUGG---CUCAGCAUCAUCCGCAGCAACAUCUAGCGCAUAAUAAUUGCCU---- ((.(((((((...(((....))).....(.(((((..(((.....))---).))))).)....((.((........))))....)))))))))---- ( -20.10, z-score = -0.44, R) >droYak2.chrX 18390826 91 - 21770863 AGAGUAGUUAAACAGGGAAACUUAUUUCGUUGCUGUCGCUAAUUUGG---CUCCGAAUCAGCCGCAGCAACAUCUAGCGCAUAAUAAUUGCCUA--- ((.(((((((...(((....))).....((((((((.(((.(((((.---...))))).))).)))))))).............))))))))).--- ( -30.50, z-score = -3.58, R) >droEre2.scaffold_4690 2442517 91 + 18748788 AGAGUAGUUAAACAGGGAAACUUAUUUCGUUGCUGUCGCUAAUUUGG---CUCAGCAUCAGCCGCAGCAACAUCUAGCGCAUAAUAAUUGCCUA--- ((.(((((((...(((....))).....((((((((.(((....((.---.....))..))).)))))))).............))))))))).--- ( -24.60, z-score = -1.38, R) >droAna3.scaffold_13117 2520875 97 + 5790199 AGGGCAGUAGGAGGACUAAACUUAUUUCUUCCCUGUCGCUAAUUUGGAAGCCCAGCAUCAGCCGCAGCAACAUCUAGCGCAUAAUAAUUGCCUACUA .(((((((.((((((...........))))))((((.(((.((((((....)))).)).))).))))...................))))))).... ( -25.30, z-score = -0.66, R) >droVir3.scaffold_12928 3095879 73 + 7717345 ----CGAGUGGUUGAGUGCACUUGCAUAGUUUGUGUCGACCAUUUGG-----------------CAACAACAACUAACGCCUUAUAAUUGCCCA--- ----.((((((((((((((....))))........))))))))))((-----------------(((......(....)........)))))..--- ( -17.64, z-score = -0.54, R) >consensus AGAGUAGUUAAACAGGGAAACUUAUUUCGUUGCUGUCGCUAAUUUGG___CUCAGCAUCAGCCGCAGCAACAUCUAGCGCAUAAUAAUUGCCUA___ ...(((((((...(((....))).....((((((((.(((.((((((....)))).)).))).)))))))).............)))))))...... (-15.28 = -17.13 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:02 2011