| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,172,865 – 10,172,916 |
| Length | 51 |
| Max. P | 0.930099 |
| Location | 10,172,865 – 10,172,916 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 80.20 |
| Shannon entropy | 0.35162 |
| G+C content | 0.45098 |
| Mean single sequence MFE | -13.62 |
| Consensus MFE | -11.50 |
| Energy contribution | -11.90 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.930099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10172865 51 - 23011544 UUGGCCAAGUUUUUGUAGAAACCAUUGCCAAUACUCGUUGGCCAGUUCCCA ((((((((((.((.((((......)))).)).)))...)))))))...... ( -11.80, z-score = -1.51, R) >droSim1.chr2L 9951831 51 - 22036055 UUGGUCAAGUUUUUGGCAAAACCAUUGCCAACUCUCGUUGGCCAAGUACCA (((((((((...(((((((.....)))))))....).))))))))...... ( -16.60, z-score = -2.83, R) >droSec1.super_3 5598058 51 - 7220098 UUGCUCAAGUUUUUGGCGAAACCAUUGCCAACACUUGUUGGCCAAGUACCA ..((((((((..(((((((.....))))))).)))))..)))......... ( -13.70, z-score = -1.46, R) >droYak2.chr2L 12845100 51 - 22324452 UUGGGCAAGUUUCUGGAGAAACCAUUUCCAGUACUCAUGGGCCAAGUUGCU ((((.(.(((..(((((((.....))))))).)))....).))))...... ( -14.60, z-score = -0.94, R) >droEre2.scaffold_4929 10777955 51 - 26641161 UUGGUCUAGCUUCUGGAGAAACCAUUUCCAAAACUCAUUGGCCAAGUUCCU ((((((.((.((.((((((.....)))))).))))....))))))...... ( -11.40, z-score = -0.97, R) >consensus UUGGUCAAGUUUUUGGAGAAACCAUUGCCAACACUCGUUGGCCAAGUACCA ((((((((....(((((((.....)))))))......))))))))...... (-11.50 = -11.90 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:46 2011