Locus 13218

Sequence ID	dm3.chrX
Location	5,083,530 – 5,083,621
Length	91
Max. P	0.610962

overview

Window 2

Location	5,083,530 – 5,083,621
Length	91
Sequences	4
Columns	92
Reading direction	forward
Mean pairwise identity	54.83
Shannon entropy	0.73644
G+C content	0.43044
Mean single sequence MFE	-21.65
Consensus MFE	-7.21
Energy contribution	-7.65
Covariance contribution	0.44
Combinations/Pair	1.36
Mean z-score	-1.27
Structure conservation index	0.33
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.25
SVM RNA-class probability	0.610962
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 5083530 91 + 22422827
-GCAUUUUUUGCUGCUAAGUAAUGCAAUUUCCUCGUUAAUUGCGAAGUUGCGUUAAUGCAUUUUUGGCCUGGUUUGGCGUUUGGUUUCCCCU
-(((.....)))(((....(((((((((((((.........).))))))))))))..)))......(((......))).............. ( -22.80, z-score =  -1.04, R)
>droYak2.chrX 18387446 80 - 21770863
--------UAGCUGCUAAGUAAUGUAAUUUCCUCGUUAAUUGCGAAGUUGCGUUAAUGCAUUUUUCACAUGCUUUGGCUGCUA-CUCUU---
--------((((.(((((((((((((((((((.........).))))))))))))..((((.......)))))))))).))))-.....--- ( -22.30, z-score =  -2.89, R)
>droEre2.scaffold_4690 2439073 89 + 18748788
GCCUUUUUUUGCUACUAAGUAAUGUAAUUUUCUCGUUUAUUACGAAGUUGCAUUAAUGCAUUUUUGGCACGGUUUGGGUGCUAACUCCU---
(((......(((.......((((((((((...((((.....))))))))))))))..))).....))).......((((....))))..--- ( -19.90, z-score =  -1.72, R)
>dp4.chrXL_group1a 5075076 79 - 9151740
--GAGAUCAAUCUGUAUUCGACCGCCAUAUACCCAUUAAA-GCGGAGGCGCACCUGCA-AGCCAUGGCUGGAGGGGCAUGCCG---------
--...................((((..((.......))..-)))).(((((.(((.((-.((....)))).))).))..))).--------- ( -21.60, z-score =   0.55, R)
>consensus
__CAUUUUUAGCUGCUAAGUAAUGCAAUUUCCUCGUUAAUUGCGAAGUUGCAUUAAUGCAUUUUUGGCAUGGUUUGGCUGCUA_CUCCU___
...................((((((((((...((((.....))))))))))))))..................................... ( -7.21 =  -7.65 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:01 2011