Locus 13217

Sequence ID dm3.chrX
Location 5,082,559 – 5,082,679
Length 120
Max. P 0.821794
window18181

overview

Window 1

Location 5,082,559 – 5,082,679
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 65.06
Shannon entropy 0.44730
G+C content 0.45471
Mean single sequence MFE -26.55
Consensus MFE -16.49
Energy contribution -17.50
Covariance contribution 1.01
Combinations/Pair 1.29
Mean z-score -1.46
Structure conservation index 0.62
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.80
SVM RNA-class probability 0.821794
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 5082559 120 + 22422827
CACCAAUUAAUUCUUGCUGAUUUAUGAAUCUGUUGGAGCAUGUAUCGCGUUCAAUAAGGCCAUCAAAUCGGAAAUUUCCCGAUUCAAUGUGGCUAUUCUCAGUACCAGAAAAUUAAUCUC
..........((((((((((..........(((((((((.......)).))))))).((((((..((((((.......))))))....))))))....))))))..)))).......... ( -27.90, z-score =  -1.99, R)
>droEre2.scaffold_4690 2438123 92 + 18748788
----------------------------UCCGUUUGAGCACGAAGUGCGUUCAAUAUGGCCCGCAAAUCGGUAAUCUGCUGGGACAAUGUGGCUAUCCAGAACAGCAGUAAAUCAAGCUC
----------------------------...((((((((((...))))((((...((((((.(((..(((((.....))))).....)))))))))...)))).........)))))).. ( -26.20, z-score =  -1.18, R)
>droYak2.chrX 18386528 92 - 21770863
----------------------------UCUGCCUGAGCACGAAGGGCGUUCAAUAUGGCCACCAAAUCGGUAAUCUCCUGAGACAGUGUGGCUAUCCAGAACACCAGAAUAUCAAGCUC
----------------------------...((.(((........((.((((...(((((((((...((((.......))))....).))))))))...)))).))......))).)).. ( -25.54, z-score =  -1.22, R)
>consensus
____________________________UCUGUUUGAGCACGAAGCGCGUUCAAUAUGGCCACCAAAUCGGUAAUCUCCUGAGACAAUGUGGCUAUCCAGAACACCAGAAAAUCAAGCUC
...............................((((((((.......))((((...((((((((....((((.......))))......))))))))...)))).........)))))).. (-16.49 = -17.50 +   1.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:00 2011