| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,065,977 – 5,066,069 |
| Length | 92 |
| Max. P | 0.930807 |
| Location | 5,065,977 – 5,066,069 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 62.84 |
| Shannon entropy | 0.64739 |
| G+C content | 0.36855 |
| Mean single sequence MFE | -18.90 |
| Consensus MFE | -11.70 |
| Energy contribution | -11.94 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.69 |
| Mean z-score | -0.78 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.930807 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5065977 92 - 22422827 AAAAAGAGGGAGAGCGAGAAGCGCGGGGAGGAGAGACACGAGAUCCAUUAAUUUCAUUUCGCUAUUUUUCUUAAACGUCUUUUUUUUGCGUU- .............((((((((.(((...((((((((..((((((...........))))))...))))))))...)))...))))))))...- ( -18.90, z-score = 0.71, R) >droSim1.chrX 3911813 84 - 17042790 --------AAAGAGAGAGAGAGAGAGAGGGGAGAGACACGAGAUCCAUUAAUUUCAUUUCGCUAUUUUUCUCAAAUGUCUUUUUUUUGCGUU- --------...(..(((((((((.(...((((((((..((((((...........))))))...))))))))...).)))))))))..)...- ( -20.40, z-score = -0.79, R) >droSec1.super_4 4490079 83 + 6179234 ----------AAAAAGAGAAAGAUAGAGGGGAGAGACACGAGAUCCAUUAAUUUCAUUUCGCUAUUUUUCUCAAACGUCUUUUUUUUUGCGUU ----------..((((((((((((....((((((((..((((((...........))))))...))))))))....))))))))))))..... ( -20.00, z-score = -1.91, R) >droYak2.chrX 18367763 81 + 21770863 --------CGAAAGAGAGAAGCGCUGAGGAGAAAAACACGAGAUCCAUUAAUUUCAUUUCGCUAUUUUUCUCAAACGUUUUUUUCCGUU---- --------.....((((((((((.....((((((((..((((((...........))))))...))))))))...))))))))))....---- ( -20.20, z-score = -1.84, R) >droGri2.scaffold_14853 2204211 85 - 10151454 ----AAAACUAAAAGAGCAAGCAGGAUGAGAGAGGAUAGGCAAGGCA-AAGCAUUAAUUUGUUGUUUUUUC--GUCGUUUUUAUGUUGUGAU- ----................((((.(((((((.(((.(((((..(((-((.......)))))))))).)))--....))))))).))))...- ( -15.00, z-score = -0.07, R) >consensus ________CGAAAGAGAGAAGCACAGAGGGGAGAGACACGAGAUCCAUUAAUUUCAUUUCGCUAUUUUUCUCAAACGUCUUUUUUUUGCGUU_ ...........((((((((((((.....((((((((..((((((...........))))))...))))))))...))))))))))))...... (-11.70 = -11.94 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:16:57 2011