| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,049,035 – 5,049,087 |
| Length | 52 |
| Max. P | 0.662273 |
| Location | 5,049,035 – 5,049,087 |
|---|---|
| Length | 52 |
| Sequences | 11 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 94.01 |
| Shannon entropy | 0.13606 |
| G+C content | 0.42258 |
| Mean single sequence MFE | -11.65 |
| Consensus MFE | -10.35 |
| Energy contribution | -10.53 |
| Covariance contribution | 0.18 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.662273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5049035 52 + 22422827 GCUAUAAAUUGUUUAUACGGUUCACUUGGCUUUCGGGCCAUUU-GGGAUCACA ..................(((((...(((((....)))))...-.)))))... ( -12.00, z-score = -1.97, R) >droSec1.super_4 4473690 52 - 6179234 GCUAUAAAUUGUUUAUACGGUUCACUUGGCUUUCGGGCCAUUU-GGGAUCACA ..................(((((...(((((....)))))...-.)))))... ( -12.00, z-score = -1.97, R) >droYak2.chrX 18351473 52 - 21770863 GCUAUAAAUUGUUUAUACGGUUCACUUGGCUUUCGGGCCAUUU-GGGAUCACA ..................(((((...(((((....)))))...-.)))))... ( -12.00, z-score = -1.97, R) >droEre2.scaffold_4690 2405051 52 + 18748788 GCUAUAAAUUGUUUAUACGGUUCACUUGGCUUUCGGGCCAUUU-GGGAUCAUU ..................(((((...(((((....)))))...-.)))))... ( -12.00, z-score = -2.01, R) >droAna3.scaffold_13117 2483894 52 + 5790199 GCUAUAAAUUGUUUAUACGGUUCACUUGGCUUUGGGGCCAUUU-GGGAUCACA ..................(((((...(((((....)))))...-.)))))... ( -12.00, z-score = -1.57, R) >droPer1.super_11 2163180 52 - 2846995 GCUAUAAAUUGUUUAUACGGUUCACUUGGCUUUGGGGCCAUUU-GGGAUCACA ..................(((((...(((((....)))))...-.)))))... ( -12.00, z-score = -1.57, R) >dp4.chrXL_group1a 5031777 52 - 9151740 GCUAUAAAUUGUUUAUUCGGUUCACUUGGCUUUGGGGCCAUUU-GGGAUCACA ..................(((((...(((((....)))))...-.)))))... ( -12.00, z-score = -1.51, R) >droWil1.scaffold_180588 734722 52 - 1294757 GCUAUAAAUUGUUUAUACGGUUCACUUGGCUUUGGGGCCAUUU-GGGAUCACA ..................(((((...(((((....)))))...-.)))))... ( -12.00, z-score = -1.57, R) >droVir3.scaffold_12928 3033735 53 + 7717345 ACUAUAAAUUGUUUAUACGGUUCACUUGGCUUUGGGGCCAUUUUGGGAUCAGA ..................(((((...(((((....))))).....)))))... ( -11.40, z-score = -1.36, R) >droMoj3.scaffold_6473 16436920 53 - 16943266 GCUAUAAAUUGUUUAUGCGCUUCACUUGCCUUUGAGGCCAUUUUGGGAUCAGA .......(((.(..(((.((((((........)))))))))...).))).... ( -8.30, z-score = 0.71, R) >droGri2.scaffold_14853 2178768 53 + 10151454 GCUAUAAAUUGCUUAUACGGUUCACUUGGCUUUGGGGCCAUUUCGGGAUCAGC ((........))......(((((...(((((....))))).....)))))... ( -12.40, z-score = -1.18, R) >consensus GCUAUAAAUUGUUUAUACGGUUCACUUGGCUUUGGGGCCAUUU_GGGAUCACA ..................(((((...(((((....))))).....)))))... (-10.35 = -10.53 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:16:57 2011