| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,024,486 – 5,024,593 |
| Length | 107 |
| Max. P | 0.930701 |
| Location | 5,024,486 – 5,024,593 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 82.08 |
| Shannon entropy | 0.28214 |
| G+C content | 0.33408 |
| Mean single sequence MFE | -19.25 |
| Consensus MFE | -16.26 |
| Energy contribution | -16.07 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.903871 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5024486 107 + 22422827 GAGAACGCGUAAAGCGUAAACUACAAAUUGUUUUGUAGUUGCCUCAAAUGCUUCUUGUUCUUUUCAUUUUUGUUUUAUUUAUUUUUUUUCAUUCUUAUUUU-GUUGCG (((((.(((..((((((.(((((((((....))))))))).......))))))..)))..)))))....................................-...... ( -17.90, z-score = -1.76, R) >droYak2.chrX 18326510 97 - 21770863 GAGAACGCGUAAAGCGUAAACUACAAAUUGUUUUGUAGUUGCCUCAAAUGCUUCUUGCUCUUUUCAUUUUU----------UUGUUGUUUCCUCUUAUUUU-GUUGCG (((((.(((..((((((.(((((((((....))))))))).......))))))..)))..)))))......----------....................-...... ( -19.50, z-score = -2.19, R) >droEre2.scaffold_4690 2380831 95 + 18748788 GAGAACGCGUAAAGCGUAAACUACAAAUUGUUUUGUAGUUGCCUCAAAUGCUUCUUGUUCUUUUCAUUUUU------------UUUGUUCUUUCUUAUUUU-GCUGCG (((((.(((..((((((.(((((((((....))))))))).......))))))..)))..)))))......------------..................-...... ( -17.90, z-score = -1.67, R) >droAna3.scaffold_13117 2459093 103 + 5790199 GAGAACGCGUAAAGCGUAAACUACAAAUUGUUUUGUAGUUGCUUCAAAUGCGAGUUGUACCUUUCGUUCGUUUUUU-----CUCUCGUUUCUGCUUAUUUUUGUUGAA ((((((((.....)))).(((((((((....))))))))).........(((((........))))).........-----.))))..(((.((........)).))) ( -21.70, z-score = -1.11, R) >consensus GAGAACGCGUAAAGCGUAAACUACAAAUUGUUUUGUAGUUGCCUCAAAUGCUUCUUGUUCUUUUCAUUUUU__________UUUUUGUUCCUUCUUAUUUU_GUUGCG (((.((((.....)))).(((((((((....)))))))))..)))............................................................... (-16.26 = -16.07 + -0.19)
| Location | 5,024,486 – 5,024,593 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 82.08 |
| Shannon entropy | 0.28214 |
| G+C content | 0.33408 |
| Mean single sequence MFE | -18.14 |
| Consensus MFE | -15.06 |
| Energy contribution | -14.75 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.930701 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5024486 107 - 22422827 CGCAAC-AAAAUAAGAAUGAAAAAAAAUAAAUAAAACAAAAAUGAAAAGAACAAGAAGCAUUUGAGGCAACUACAAAACAAUUUGUAGUUUACGCUUUACGCGUUCUC ......-......((((((....................(((((..............)))))((((((((((((((....)))))))))...)))))...)))))). ( -16.14, z-score = -1.70, R) >droYak2.chrX 18326510 97 + 21770863 CGCAAC-AAAAUAAGAGGAAACAACAA----------AAAAAUGAAAAGAGCAAGAAGCAUUUGAGGCAACUACAAAACAAUUUGUAGUUUACGCUUUACGCGUUCUC .((..(-(((......(....).....----------.............((.....)).))))..))(((((((((....))))))))).((((.....)))).... ( -19.00, z-score = -2.23, R) >droEre2.scaffold_4690 2380831 95 - 18748788 CGCAGC-AAAAUAAGAAAGAACAAA------------AAAAAUGAAAAGAACAAGAAGCAUUUGAGGCAACUACAAAACAAUUUGUAGUUUACGCUUUACGCGUUCUC ......-..........(((((...------------.....(....).........((...(((((((((((((((....)))))))))...)))))).))))))). ( -16.70, z-score = -1.42, R) >droAna3.scaffold_13117 2459093 103 - 5790199 UUCAACAAAAAUAAGCAGAAACGAGAG-----AAAAAACGAACGAAAGGUACAACUCGCAUUUGAAGCAACUACAAAACAAUUUGUAGUUUACGCUUUACGCGUUCUC ........................(((-----((........(....)........(((...(((((((((((((((....)))))))))...)))))).)))))))) ( -20.70, z-score = -1.97, R) >consensus CGCAAC_AAAAUAAGAAGAAACAAAAA__________AAAAAUGAAAAGAACAAGAAGCAUUUGAGGCAACUACAAAACAAUUUGUAGUUUACGCUUUACGCGUUCUC ...............................................(((((.....((...(((((((((((((((....)))))))))...)))))).))))))). (-15.06 = -14.75 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:16:53 2011