| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,010,479 – 5,010,581 |
| Length | 102 |
| Max. P | 0.873071 |
| Location | 5,010,479 – 5,010,581 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 72.91 |
| Shannon entropy | 0.50271 |
| G+C content | 0.51609 |
| Mean single sequence MFE | -31.38 |
| Consensus MFE | -15.90 |
| Energy contribution | -17.57 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.873071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5010479 102 + 22422827 CAAAAUUCAAUAUCCACGGACG-GUCGUGGGUUUAAGGG-----------GCUCGCUGAAUCAUAAGUUUCAGUGCCACUUCAGCUCCCCCCCUUGAAAAAA-GCACACACACUC ............(((((((...-.)))))))((((((((-----------(...((((((.(((........)))....))))))....)))))))))....-............ ( -27.30, z-score = -1.80, R) >droPer1.super_11 2113905 93 - 2846995 CAGAAUUCAAUAUCCACUGCUACGUGGCGAGGAAGAUGGU---------GGCUCGCAAGAGC-UAAGAG-CGGUUCAGCAGCCAGCCUCCC-------AACCUCCAGCCUC---- ................(((.....(((.((((....((((---------(((((....))))-)....(-(......)).)))).))))))-------).....)))....---- ( -29.80, z-score = -0.94, R) >droEre2.scaffold_4690 2362649 106 + 18748788 CAAAAUUCAAUAUCCACGGCCG-GUCGUGGGUUAAGGGGGACC---AAAGGUUCGCUGAAUCAUGUGCUUCAGUGCCACUUUAGCCCCCCU-----UAAAAAGGCACACACACUC ............(((((((...-.)))))))(((((((((.(.---((((...(((((((.(....).)))))))...)))).).))))))-----)))................ ( -36.20, z-score = -2.73, R) >droYak2.chrX 18311345 111 - 21770863 CAAAAUUCAAUAUCCACGGGCG-GUCGUGGGUUAAGGAGGGCCGCCAGAGGCUCUCUGAAUCAUAUGCUUCAGUGCCACUUCAGCUCCCCU---UGAAAAACAGCACACACACUC ....((((...((((((((...-.))))))))...((((((((......))))))))))))...........((((...(((((......)---)))).....))))........ ( -30.90, z-score = -0.83, R) >droSec1.super_4 4432969 111 - 6179234 CAAAAUUCAAUAUCCACGGACG-GUCGUGGGUUAAGGGGCACC---AAAGGCUCGCUGAAUCAUAAGCUUCAGUGCCACUUCAGGCCCCCCCUUGAAAAAAAAGCACACACACUC .....(((((.((((((((...-.))))))))...(((((.(.---.(((...(((((((.(....).)))))))...)))..))))))...))))).................. ( -32.00, z-score = -1.95, R) >droSim1.chrX 3856252 110 + 17042790 CAAAAUUCAAUAUCCACGGACG-GUCGUGGGUUAAGGGGCACC---AAAGGCUCGCUGAAUCAUAAGCUUCAGUGCCACUUCAGGCCCCCU-UUGAAAAAAAGGCACACACACUC .....(((((.((((((((...-.))))))))...(((((.(.---.(((...(((((((.(....).)))))))...)))..))))))..-))))).................. ( -32.10, z-score = -1.93, R) >consensus CAAAAUUCAAUAUCCACGGACG_GUCGUGGGUUAAGGGGCACC___AAAGGCUCGCUGAAUCAUAAGCUUCAGUGCCACUUCAGCCCCCCC_____AAAAAAAGCACACACACUC ...........((((((((.....))))))))...(((((.........(((..((((((........))))))))).......))))).......................... (-15.90 = -17.57 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:16:52 2011