| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,000,847 – 5,000,949 |
| Length | 102 |
| Max. P | 0.697707 |
| Location | 5,000,847 – 5,000,949 |
|---|---|
| Length | 102 |
| Sequences | 11 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 69.94 |
| Shannon entropy | 0.65304 |
| G+C content | 0.35510 |
| Mean single sequence MFE | -19.12 |
| Consensus MFE | -4.36 |
| Energy contribution | -4.18 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.23 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.697707 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5000847 102 + 22422827 UGAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAAGCCAGGGGACUGGCAGCAGC--AGCAAUCCACUCCACCCUUUUUUUUUU------ ....((((((((..((((...((((((.....))))))))))..))))))))...(((((....))))).((...--.))........................------ ( -25.10, z-score = -3.76, R) >droSim1.chrX_random 1745529 98 + 5698898 UGAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAAGCCAGGGGACUGGCAGCAG---AGCAACCCACUACACCCUUUUUUU--------- ....((((((((..((((...((((((.....))))))))))..))))))))...(((((....))))).....---........................--------- ( -23.90, z-score = -4.33, R) >droSec1.super_4 4423538 97 - 6179234 UGAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAAGCCAGGGGACUGGCAGCAG---AGCAACCCACUACACCCUUUUUU---------- ....((((((((..((((...((((((.....))))))))))..))))))))...(((((....))))).....---.......................---------- ( -23.90, z-score = -4.34, R) >droYak2.chrX 18301651 110 - 21770863 UGAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAAGCCAGGGGACUGACAGCAACCCACUAGCGCUCUCCACCCUUUUUUUCUUUCUUGU ....((((((((..((((...((((((.....))))))))))..))))))))......(((((...((.(((...........))).))..))))).............. ( -19.30, z-score = -1.72, R) >droEre2.scaffold_4690 2353098 110 + 18748788 UGAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGGCAAGCCAGGGGACUGGCAGUAACCCACUAGCGCUCUCCACCCCUUUUCCUUUUUUUAU .....(((((((..((((...((((((.....))))))))))..)))))))((..(((((....)))))(((.....))).))........................... ( -24.60, z-score = -2.36, R) >droAna3.scaffold_13117 2436667 106 + 5790199 UGAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAAGCCAAGGGA----CAGCUCGUCCCACGCUCUUAUCCCUUUUCCCUUUUUCGUUGG ....((((((((..((((...((((((.....))))))))))..))))))))..(((...((((----(.....)))))..))).......................... ( -21.50, z-score = -2.68, R) >dp4.chrXL_group1a 4968022 95 - 9151740 UCAUUCAUAAUUUAUACAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGAAAACGCAGGACAAUCCCUGCAGGACAUCGGCCCGC-ACACCCUU-------------- ...((((((((((...((...((((((.....))))))..)).))))))))))...(((((......))))).((........))..-........-------------- ( -20.20, z-score = -3.45, R) >droPer1.super_11 2100638 95 - 2846995 UCAUUCAUAAUUUAUACAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAACGCAGGACAAUCCCUGCAGGACAUCGGCCCGC-ACACCCUU-------------- ....(((((((((...((...((((((.....))))))..)).)))))))))....(((((......))))).((........))..-........-------------- ( -18.90, z-score = -3.03, R) >droWil1.scaffold_180588 686941 91 - 1294757 UCAUUUAUAAUUUAUACAACUUUAAUGAACAACAUUAAUAUGCGAAAUAUGACAAGGCAAGGGU----CCGCAUGGUCCUU-CUCUCAACGCCCAU-------------- ....(((((.(((...((...((((((.....))))))..))..))))))))...(((((((..----(.....)..))))-........)))...-------------- ( -11.10, z-score = 0.49, R) >droMoj3.scaffold_6473 16331019 103 - 16943266 UCAUUUAUAAUUUAUACAACUUUAAUGAACAGCAUUAAUAUGCGAAAUAUGACAGGGUUGAGCGUUUCAAGAAGGAUUUCCCUAGCUAAUACCAUAUUUUUUU------- (((((..................)))))...((((....))))((((((((....(((((.(.(..((......))..).).))))).....))))))))...------- ( -12.07, z-score = 0.60, R) >droVir3.scaffold_12928 2951366 80 + 7717345 UCAUAUAUAAUUUAUACAACUUUAAUGAACAACAUUAAUAUGCGAAAUAUGACAGGGCUGAGUCCUUUCCUU----UUUCCUUU-------------------------- .....................((((((.....)))))).....((((...((.(((((...))))).))...----))))....-------------------------- ( -9.80, z-score = -0.79, R) >consensus UGAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAAGCCAGGGGACUGGCAGCAGG_CACCAGCCCUCUACACCCUUUUUU__________ ....(((((.((..((.....((((((.....))))))..))..)).))))).......................................................... ( -4.36 = -4.18 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:16:48 2011