| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,987,212 – 4,987,271 |
| Length | 59 |
| Max. P | 0.987015 |
| Location | 4,987,212 – 4,987,271 |
|---|---|
| Length | 59 |
| Sequences | 5 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 60.99 |
| Shannon entropy | 0.73158 |
| G+C content | 0.31570 |
| Mean single sequence MFE | -5.55 |
| Consensus MFE | -3.92 |
| Energy contribution | -3.04 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 2.17 |
| Mean z-score | -0.76 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.26 |
| SVM RNA-class probability | 0.987015 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4987212 59 - 22422827 GGAAGAUGUUUUUUUUUCCCGACCCAAAAUAAAAAUAAAAACUGAUUAAAACGCGUAAC ((((((.......))))))........................................ ( -4.50, z-score = 0.29, R) >droSim1.chrX_random 1738108 56 - 5698898 GGAGAGUGUUUUUCUCCAACCCGAAAUAA---AAAUAAAAACUAAUUAAAACGCGUAAC ((((((.....))))))............---........................... ( -8.00, z-score = -1.81, R) >droSec1.super_4 4417509 56 + 6179234 GGAGAGUGUUUUUCUCCAACACAAAAUAA---AAAUAAAAACUAAUUAAAACGCGUAAC ((((((.....))))))............---........................... ( -8.00, z-score = -2.40, R) >droPer1.super_15 2160314 59 + 2181545 GUAAAUUGCUUGAAUAUGCCACCCAAAAACCCAAAAAAAGAACGAUUAAAAUGCGAUAC ....(((((...........................................))))).. ( -1.63, z-score = 0.21, R) >triCas2.chrUn_4 470305 55 - 1175385 GGAGAACAUCUUGCUCUAUGAGCGAAUAAUUGAAAUUAAAGCAUAUCAAAAAGAC---- ........((((((((...))))......((((.((......)).)))).)))).---- ( -5.60, z-score = -0.10, R) >consensus GGAGAAUGUUUUUCUCUAACACCAAAUAA___AAAUAAAAACUAAUUAAAACGCGUAAC ((((((.....)))))).......................................... ( -3.92 = -3.04 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:16:47 2011