| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,946,975 – 4,947,058 |
| Length | 83 |
| Max. P | 0.559884 |
| Location | 4,946,975 – 4,947,058 |
|---|---|
| Length | 83 |
| Sequences | 6 |
| Columns | 83 |
| Reading direction | forward |
| Mean pairwise identity | 73.66 |
| Shannon entropy | 0.47631 |
| G+C content | 0.38967 |
| Mean single sequence MFE | -13.34 |
| Consensus MFE | -5.10 |
| Energy contribution | -5.10 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559884 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4946975 83 + 22422827 GAUAACAUUCAAAGCCGAGAUUUAUUUGUGCAGUGAAUCAACAAACAAGAAUACCCAGCACAAAGGAAACGGCAGAGAGGAAC .............(((........(((((((.((......))......(......).)))))))(....)))).......... ( -15.30, z-score = -2.57, R) >droSec1.super_4 4379250 81 - 6179234 GAUAACAUUCAAAGCCGAGAUUUAUUUGUGCAGUGAAUCAACAAACAAGAAUACCCAGCACAAAGGAAACGGCAGAG--GAAC .......(((...(((........(((((((.((......))......(......).)))))))(....))))....--))). ( -15.40, z-score = -2.62, R) >droEre2.scaffold_4690 2306835 83 + 18748788 GAUAACAUUCAAAGCCGAGAUUUAUUUGUGCAGUGAAUCAACAAACAAGAAUACCCAGCACAAAGGAAACGGCAGAGAGGAAC .............(((........(((((((.((......))......(......).)))))))(....)))).......... ( -15.30, z-score = -2.57, R) >droAna3.scaffold_13417 309981 75 + 6960332 GUACAAAUUUAAAACCGAGAUUUAUUUGUGCAGUGAAUCAACAAGCAAGAAUACACAGCACAAAAGGAGAGGCAG-------- ..............((....((..(((((((.(((..((.........))...))).)))))))..))..))...-------- ( -12.30, z-score = -2.00, R) >droWil1.scaffold_181096 12358429 71 + 12416693 GAUAAAAUUCAAAGCCGAGAUUUAUUUGUGCAGUGAAUCGACAACAAAAAGACGUUAAGGCAAAAAGAAGA------------ .............(((..((((((((.....))))))))...(((........)))..)))..........------------ ( -10.50, z-score = -1.25, R) >droGri2.scaffold_14853 4145741 70 + 10151454 GAUAAAAUUCAAAGCUGAGAUUUAUUUGUGCAGUGAAUCAACACACACACACACAUGCCCAGCGAGAAAC------------- .......(((...((((.(.......((((..(((......))).))))........).))))..)))..------------- ( -11.26, z-score = -1.10, R) >consensus GAUAAAAUUCAAAGCCGAGAUUUAUUUGUGCAGUGAAUCAACAAACAAGAAUACCCAGCACAAAAGAAACGGCAG________ ..................((((((((.....))))))))............................................ ( -5.10 = -5.10 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:16:45 2011