Locus 13203

Sequence ID dm3.chrX
Location 4,942,434 – 4,942,528
Length 94
Max. P 0.737405
window18162

overview

Window 2

Location 4,942,434 – 4,942,528
Length 94
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 93.96
Shannon entropy 0.09765
G+C content 0.26476
Mean single sequence MFE -16.90
Consensus MFE -14.06
Energy contribution -15.75
Covariance contribution 1.69
Combinations/Pair 1.04
Mean z-score -2.02
Structure conservation index 0.83
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.54
SVM RNA-class probability 0.737405
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 4942434 94 + 22422827
GUUGUGCAUCAAUCAAUAUAGUAAUAUAUUGAAUUACAUCCAUACAAAACAGAAACAAAAUUUUUUUUGAGUAAUAUUUUUUACAAGUGCGCUG
...((((((...((((((((....)))))))).................((((((........)))))).((((......))))..)))))).. ( -18.70, z-score =  -2.61, R)
>droSim1.chrX 3836464 93 + 17042790
GUUGUGCAUCAAGCAAUAUAGAAAUAUAUUGAAAUACAUCCAUACAAAACAGAAACGAA-UUUUUUUUGAGUAAUAUUUUUUACAAGUGCGCUG
...((((((....(((((((....)))))))..................((((((....-...)))))).((((......))))..)))))).. ( -17.20, z-score =  -1.78, R)
>droSec1.super_4 4374815 93 - 6179234
GUUGUGCAUCAAGCAAUAUAGAAAUAUAUUGAAAUACAUCCAUACAAAACAAAAACGAA-UUUUUUUUGAGUAAUAUUUUUUACAAGUGCGCUG
...((((((....(((((((....)))))))..................((((((....-...)))))).((((......))))..)))))).. ( -17.10, z-score =  -1.86, R)
>droEre2.scaffold_4690 2302281 94 + 18748788
GUUGUGCAUUAAACAAUAUAAAAAUAUAUUGAAAUACAUCCAUACAAAACAGAACCAAAAUUUUUUUCGAGUAAUAUUUUUUACAAGUGCGCUG
...(((((((...(((((((....))))))).......................................((((......)))).))))))).. ( -14.60, z-score =  -1.83, R)
>consensus
GUUGUGCAUCAAGCAAUAUAGAAAUAUAUUGAAAUACAUCCAUACAAAACAGAAACAAA_UUUUUUUUGAGUAAUAUUUUUUACAAGUGCGCUG
...((((((....(((((((....)))))))..................((((((........)))))).((((......))))..)))))).. (-14.06 = -15.75 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:16:44 2011