Locus 13201

Sequence ID dm3.chrX
Location 4,913,959 – 4,914,058
Length 99
Max. P 0.533125
window18160

overview

Window 0

Location 4,913,959 – 4,914,058
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 72.25
Shannon entropy 0.44574
G+C content 0.50599
Mean single sequence MFE -33.20
Consensus MFE -13.80
Energy contribution -14.76
Covariance contribution 0.96
Combinations/Pair 1.23
Mean z-score -1.94
Structure conservation index 0.42
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.08
SVM RNA-class probability 0.533125
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chrX 4913959 99 - 22422827
UGUGCAACAUUUUGCGAUGUUUGCAGCACGAUGCCAUUGCCAUUGCCAUUGCCAUGGCCAACGCCAUGGCGUUGUGGUUGUGUUGUCUGUCUUGCACUC
.((((((......((((((...(((......)))))))))(((.((((((((((((((....)))))))))..))))).))).........)))))).. ( -39.10, z-score =  -2.05, R)
>droSim1.chrX 3807325 93 - 17042790
UGUGCAACAUUUUGCGAUGUUUGCAGCACGAUGCCAUUGCCAUUGCCAUGGCCAUGG------CCAUUGCGAUGUGGUUGUGUUGUCUGUCUUGCACUC
.((((((((((....)))))..((((.(((((((.((..(.(((((.(((((....)------)))).))))))..)).)))))))))))..))))).. ( -37.40, z-score =  -2.31, R)
>droSec1.super_4 4346838 87 + 6179234
UGUGCAACAUUUUGCGAUGUUUGCAGCACGAUGCCAUUGCCAUUGCCAUGG------------CCAUUGUGAUGUGGUUGUGUUGUCUGUCUUGCACUC
.((((((.((...((((..((..((.(((((((((((.((....)).))))------------.))))))).))..)..)..))))..)).)))))).. ( -30.80, z-score =  -1.68, R)
>droYak2.chrX 18222599 75 + 21770863
UGUGCAACAUUUUGCGUUGUUUGCCGCACGAUGCCAUUGCCAUGGCCAUUGCGAUGU----GGCUGUUGUGUUGCACUC--------------------
.(((((((((...(((......(((((((((((((((....)))).)))))...)))----)))))).)))))))))..-------------------- ( -29.40, z-score =  -1.96, R)
>droEre2.scaffold_4690 2274420 75 - 18748788
UGUGCAACAUUUUGCGUUGUUUGCAGCACGAUGCUAUUGCCAUGGCCAUUGCGAUGU----GGCUGUUGUGCUGCACUC--------------------
...(((((.......))))).(((((((((((((....))...((((((......))----)))))))))))))))...-------------------- ( -29.30, z-score =  -1.70, R)
>consensus
UGUGCAACAUUUUGCGAUGUUUGCAGCACGAUGCCAUUGCCAUUGCCAUUGCCAUGG_____GCCAUUGUGAUGUGGUUGUGUUGUCUGUCUUGCACUC
..(((((....))))).....((((((((((((.......(((.((....)).)))........))))))))))))....................... (-13.80 = -14.76 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:16:43 2011