Locus 13200

Sequence ID dm3.chrX
Location 4,889,572 – 4,889,651
Length 79
Max. P 0.831622
window18159

overview

Window 9

Location 4,889,572 – 4,889,651
Length 79
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 56.61
Shannon entropy 0.67661
G+C content 0.47567
Mean single sequence MFE -20.95
Consensus MFE -10.88
Energy contribution -9.82
Covariance contribution -1.06
Combinations/Pair 1.44
Mean z-score -0.76
Structure conservation index 0.52
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.84
SVM RNA-class probability 0.831622
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 4889572 79 - 22422827
AUUGACUUAACUCCAGCUUCCCAAAUACCUCCGAAGUGAGGUCCUGCCGGGGGAAUAAAAUGCCAAUCAAUCCUGUCCU-----------
(((((............(((((....(((((......)))))((....)))))))...........)))))........----------- ( -13.50, z-score =   0.91, R)
>dp4.Unknown_group_180 11568 78 - 35195
GCCACCUUCACGGCGCUCUCCCAUAAUCCUCCAAAGUGAGGGGAGCGUGGGGGAAUGAAGUGAAACCUGACUCCUCGC------------
......(((((..((.((((((((..((((((.....).)))))..)))))))).))..)))))..............------------ ( -27.80, z-score =  -1.27, R)
>droMoj3.scaffold_5540 3978 79 + 4752
AUAGACUGAACUGCUGCUUCCCAGAGCCCGCCAAAGUGUGGUGCUCGAGGAGGAAUAAAAUGGAAUUUUACAUUUGUUU-----------
.......((((.....(((((..((((((((......)))).))))..)))))....(((((........)))))))))----------- ( -22.50, z-score =  -1.97, R)
>triCas2.singleUn_1341 16365 90 + 21755
AUAGAUUUAAUUCCUGCCUCCCAAAGACCUCCCAUAUGAGGGGCUCUAGGAGGUAUGAAAUGCCAACUAAUUUUUUCUGAUGUCAAAAAU
..........(((.(((((((...(((.(((((....).)))).))).))))))).)))............................... ( -20.00, z-score =  -0.69, R)
>consensus
AUAGACUUAACUCCUGCCUCCCAAAGACCUCCAAAGUGAGGGGCUCGAGGAGGAAUAAAAUGCAAACUAACUCUUUCCU___________
................(((((......((((......)))).......)))))..................................... (-10.88 =  -9.82 +  -1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:16:42 2011