| Sequence ID | dm3.chr2L |
|---|---|
| Location | 892,658 – 892,755 |
| Length | 97 |
| Max. P | 0.894230 |
| Location | 892,658 – 892,755 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 60.35 |
| Shannon entropy | 0.69122 |
| G+C content | 0.50230 |
| Mean single sequence MFE | -30.21 |
| Consensus MFE | -9.04 |
| Energy contribution | -6.96 |
| Covariance contribution | -2.08 |
| Combinations/Pair | 1.60 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894230 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 892658 97 + 23011544 --------UAUCCCCAAAUGGUUUUCAAAAAGCCAAUGACCCUGCAAACGAUUUAAUCGUGAUGCGUAAACAAACCUGGCAACCCUAGCU-AGGUGAGGGUGUGUU --------..........((((((.....))))))...((((((((.(((((...)))))..)))........(((((((.......)))-)))).)))))..... ( -29.00, z-score = -2.71, R) >droPer1.super_8 3443748 82 + 3966273 --------CUCGCACGCAGAACCCCCCAAAGCCUGGCAACCCUACCCAU----------CUGGGUGAAGAUGGCUGUGGCUGC---GGCU---GUGUGCGUGUAUU --------(.(((((((((......(((.((((.(....)..(((((..----------..))))).....)))).)))....---..))---))))))).).... ( -33.10, z-score = -2.01, R) >dp4.chr4_group2 789896 82 - 1235136 --------CUCGCACGCAGAACCCCCCAAAGCCUGGCAACCCUACCCAU----------CUAGGUGAAGAUGGCUGUGGCUGC---GGCU---GUGUGCGUGUAUU --------(.(((((((((......(((.((((...(..(((((.....----------.)))).)..)..)))).)))....---..))---))))))).).... ( -30.00, z-score = -1.47, R) >droEre2.scaffold_4929 950822 93 + 26641161 -----------GCGCGUUGUAUGCCCAAUUGGUUG-UGACCCUGCGAAUGAUUUAAUCGUGAAGCGUAAGCAAACCUGGCAACCCUAGCU-AGGUGAGGGUGUGCU -----------((((....(((..((....))..)-))(((((((((.........))))...((....))..(((((((.......)))-)))).))))))))). ( -30.40, z-score = -1.49, R) >droYak2.chr2L 877337 95 + 22324452 GCGCUUUUUAUGUCUAAAUUAUUUUUAAAAAGCCAUUGACCCUGCAA-----------GUAAAGCGUAAGCGAACCUGGCAACCCUAGCUGAGGUGAGGGUGUGCU ((((((((((...............)))))))).....(((((....-----------.....((....))..(((((((.......))).)))).)))))..)). ( -25.16, z-score = -0.69, R) >droSec1.super_14 863273 97 + 2068291 --------UAUGCCCAAUUGGUUUUCAAAAAGCCAAUGACCCUGCAAACGAUUUAGUCGUGAUGCGUAAACAAACCUGGCAACCCUAGCU-AGGUGAGGGUGUGUU --------(((((((.((((((((.....))))))))......(((.(((((...)))))..)))........(((((((.......)))-))))..))))))).. ( -31.90, z-score = -2.97, R) >droSim1.chr2L 879345 97 + 22036055 --------UAUGCCCAAUUGGUUUUCAAAAAGCCAAUGACCCUGCAAACGAUUUAGUCGUGAUGCGUAAACAAACCUGGCAACCCUAGCU-AGGUGAGGGUGUGUU --------(((((((.((((((((.....))))))))......(((.(((((...)))))..)))........(((((((.......)))-))))..))))))).. ( -31.90, z-score = -2.97, R) >consensus ________UAUGCCCAAAUGAUUUUCAAAAAGCCAAUGACCCUGCAAACGAUUUA_UCGUGAUGCGUAAACAAACCUGGCAACCCUAGCU_AGGUGAGGGUGUGUU ..........................................((((................))))..((((.((((....(((........)))..)))).)))) ( -9.04 = -6.96 + -2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:16 2011