| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,873,382 – 4,873,487 |
| Length | 105 |
| Max. P | 0.953166 |
| Location | 4,873,382 – 4,873,487 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 84.90 |
| Shannon entropy | 0.19875 |
| G+C content | 0.45909 |
| Mean single sequence MFE | -24.37 |
| Consensus MFE | -23.20 |
| Energy contribution | -23.20 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.648743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4873382 105 + 22422827 AUUUUAGCCAAAAGCCAAUGGCACAAUGAAAAAAGAAUAAUAAAAAAAAAAAAACAGCUCCUCUGCCUUGGCGCCAAAGUGGGUCACUCGGCGGCAAAAACAAUG ......(((....(((((.((((........................................)))))))))(((..((((...)))).)))))).......... ( -23.20, z-score = -1.12, R) >droSec1.super_4 4313683 88 - 6179234 AUUUUAGCCAAAAGCCAAUGGCACAA-----------------ACAGAAGAAAAAAGCGCCUCUGCCUUGGCGCCAAAGUGGGUCACUCGGCGGCAAAAACAAUG ......(((....(((((.((((...-----------------....................)))))))))(((..((((...)))).)))))).......... ( -23.80, z-score = -0.52, R) >droSim1.chrX 3774778 88 + 17042790 AUUUUAGCCAAAAGCCAAUGGCACAA-----------------AGAGAAGAAAAAAGCGCCUCUGCCUUGGCGCCAAAGUGGGUCACUCGGCGGCAAAAACAAUG ......(((....(((((.((((...-----------------.(((.............))))))))))))(((..((((...)))).)))))).......... ( -26.12, z-score = -1.13, R) >consensus AUUUUAGCCAAAAGCCAAUGGCACAA_________________AAAGAAGAAAAAAGCGCCUCUGCCUUGGCGCCAAAGUGGGUCACUCGGCGGCAAAAACAAUG ......(((....(((((.((((........................................)))))))))(((..((((...)))).)))))).......... (-23.20 = -23.20 + -0.00)
| Location | 4,873,382 – 4,873,487 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 84.90 |
| Shannon entropy | 0.19875 |
| G+C content | 0.45909 |
| Mean single sequence MFE | -29.63 |
| Consensus MFE | -26.58 |
| Energy contribution | -26.58 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.953166 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4873382 105 - 22422827 CAUUGUUUUUGCCGCCGAGUGACCCACUUUGGCGCCAAGGCAGAGGAGCUGUUUUUUUUUUUUUAUUAUUCUUUUUUCAUUGUGCCAUUGGCUUUUGGCUAAAAU ....(((((.(((((((((((...))).)))))(((((((((((((((..((............))..))))))........)))).)))))....))).))))) ( -28.20, z-score = -1.72, R) >droSec1.super_4 4313683 88 + 6179234 CAUUGUUUUUGCCGCCGAGUGACCCACUUUGGCGCCAAGGCAGAGGCGCUUUUUUCUUCUGU-----------------UUGUGCCAUUGGCUUUUGGCUAAAAU ....(((((.(((((((((((...))).)))))(((((((((.(((((...........)))-----------------)).)))).)))))....))).))))) ( -32.10, z-score = -2.56, R) >droSim1.chrX 3774778 88 - 17042790 CAUUGUUUUUGCCGCCGAGUGACCCACUUUGGCGCCAAGGCAGAGGCGCUUUUUUCUUCUCU-----------------UUGUGCCAUUGGCUUUUGGCUAAAAU ....(((((.(((((((((((...))).)))))(((((((((((((...........)))).-----------------...)))).)))))....))).))))) ( -28.60, z-score = -1.59, R) >consensus CAUUGUUUUUGCCGCCGAGUGACCCACUUUGGCGCCAAGGCAGAGGCGCUUUUUUCUUCUCU_________________UUGUGCCAUUGGCUUUUGGCUAAAAU ....(((((.(((((((((((...))).)))))(((((((((.((..................................)).)))).)))))....))).))))) (-26.58 = -26.58 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:16:39 2011