Locus 13192

Sequence ID dm3.chrX
Location 4,839,028 – 4,839,106
Length 78
Max. P 0.813145
window18146

overview

Window 6

Location 4,839,028 – 4,839,106
Length 78
Sequences 6
Columns 78
Reading direction reverse
Mean pairwise identity 80.43
Shannon entropy 0.37819
G+C content 0.34734
Mean single sequence MFE -12.35
Consensus MFE -7.84
Energy contribution -8.20
Covariance contribution 0.36
Combinations/Pair 1.10
Mean z-score -1.76
Structure conservation index 0.63
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.77
SVM RNA-class probability 0.813145
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chrX 4839028 78 - 22422827
ACUAAAUACUUCCUUUGUACAUCGAUUAGUCUUUGCAUUGGUGCAAUCGAUUAUUUCGAUUUAUUUGCACACACGAUC
................(((.(((((.(((((.(((((....)))))..)))))..))))).))).............. ( -13.10, z-score =  -1.50, R)
>droSim1.chrX 3741633 78 - 17042790
ACUAAAUACUUCCUUUGUACAUCGAUUAGUCUUUGCUUUGGUGCAAUCGAUUAUUUCGAUUUAUUUGCACACACGAUC
................(((.(((((.(((((.((((......))))..)))))..))))).))).............. ( -12.60, z-score =  -1.50, R)
>droSec1.super_4 4280445 73 + 6179234
ACUAAAUACUUCCUUUGCACAUC-----GUCUUUGCAUUGGUGCAAUCGAUUAUUUCGAUUUAUUUGCACACACGAUC
....................(((-----((.(.((((..((((.((((((.....)))))))))))))).).))))). ( -13.50, z-score =  -2.17, R)
>droYak2.chrX 18154319 78 + 21770863
ACUAAAUACUUCCUCUGCACAUCGAUUAUAAUUCGAAUUGGUGCAAUCGAUUAUUUCGAUUAAUUUGCACACACGUUC
................((((.((((.......))))....))))((((((.....))))))................. ( -14.10, z-score =  -2.20, R)
>droEre2.scaffold_4690 2201823 77 - 18748788
AUCAAA-ACUUCCUUUGCAAAUCAAUUGGUCUACGAAUUAGUGCAAUCGAUUAUUUCGAUUUAUUUGCACACACGAUC
......-.............(((((((.(....).)))).((((((((((.....))))).....)))))....))). ( -12.00, z-score =  -1.19, R)
>droAna3.scaffold_13417 189714 71 - 6960332
AUCGAAUACUACCGCCAAACAUCGAUUAGUCAAC-------UUUUAUCGAUUAAAUCGAUUUAUUUGCACACACUAUC
.............((.....(((((((((((...-------.......)))).)))))))......)).......... (  -8.80, z-score =  -2.03, R)
>consensus
ACUAAAUACUUCCUUUGCACAUCGAUUAGUCUUCGCAUUGGUGCAAUCGAUUAUUUCGAUUUAUUUGCACACACGAUC
........................................((((((((((.....))))).....)))))........ ( -7.84 =  -8.20 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:16:31 2011