| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,838,679 – 4,838,773 |
| Length | 94 |
| Max. P | 0.866805 |
| Location | 4,838,679 – 4,838,773 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 89.19 |
| Shannon entropy | 0.18197 |
| G+C content | 0.31719 |
| Mean single sequence MFE | -18.79 |
| Consensus MFE | -13.78 |
| Energy contribution | -14.34 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.866805 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4838679 94 + 22422827 GCACUGGCUUCAUAUUCAUUCGUUCAAAUAGUUUAGUGGAAAACUAUUACAAGCGAGCUUAAUUUAUUUAAGCAAUUAUGAGGAUUCAACAAAG .......(((((((.....(((((..((((((((......))))))))...)))))((((((.....))))))...)))))))........... ( -21.80, z-score = -3.44, R) >droEre2.scaffold_4690 2201483 87 + 18748788 GCACUGGCUUCAUAUU------UUCAAAUCGUUUAGUGAAAAACUAUUAUAAGCGUGCUUA-CUUAUUUAAGUAAUUAUGAGGACUCAACAAAG ....((((((((((..------.......((((((..............))))))((((((-......))))))..))))))).).))...... ( -12.64, z-score = -0.25, R) >droYak2.chrX 18153955 88 - 21770863 GCACUGGCUUCAUAUU------UUCAAAUCGUUUAGUGAAAAACUAUUAUGUUCGUGCUUACUUUACUUAAGUAAUUAUGAGGCUUCAACAAAG .....(((((((((..------..((...(((.((((.....))))..)))....)).((((((.....)))))).)))))))))......... ( -15.90, z-score = -1.47, R) >droSec1.super_4 4280090 94 - 6179234 GCACUGGCUUCAUAUUCAUUCGUUCAAAUAGUUUAGUGGAAAACUAUUACAAGCGAGCUUAAUUUAUUUAAGCAAUUAUGAGGAUUCAACAAAG .......(((((((.....(((((..((((((((......))))))))...)))))((((((.....))))))...)))))))........... ( -21.80, z-score = -3.44, R) >droSim1.chrX 3741276 94 + 17042790 GCACUGGCUUCAUAUUCAUUCGUUCAAAUAGUUUAGUGGAAAACUAUUACAAGCGAGCUUAAUUUAUUUAAGCAAUUAUGAGGAUUCAACAAAG .......(((((((.....(((((..((((((((......))))))))...)))))((((((.....))))))...)))))))........... ( -21.80, z-score = -3.44, R) >consensus GCACUGGCUUCAUAUUCAUUCGUUCAAAUAGUUUAGUGGAAAACUAUUACAAGCGAGCUUAAUUUAUUUAAGCAAUUAUGAGGAUUCAACAAAG .......(((((((............((((((((......))))))))........((((((.....))))))...)))))))........... (-13.78 = -14.34 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:16:30 2011