| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,835,154 – 4,835,247 |
| Length | 93 |
| Max. P | 0.587277 |
| Location | 4,835,154 – 4,835,247 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 66.29 |
| Shannon entropy | 0.63123 |
| G+C content | 0.35405 |
| Mean single sequence MFE | -17.86 |
| Consensus MFE | -10.03 |
| Energy contribution | -9.04 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.45 |
| Mean z-score | -0.47 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.587277 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4835154 93 + 22422827 --------CGAAAAUUACAAGCCA--ACUAUUUUCCACAUUU-AGUGGCAGAAAAUGUCUUAACUGGGUUUUUGAUUCGCUGAGUGCGUUUUAGGAACUCGUUU --------............((((--.(((...........)-))))))................((((((((((..(((.....)))..)))))))))).... ( -22.30, z-score = -1.54, R) >droEre2.scaffold_4690 2198029 93 + 18748788 --------CGAAUAUUACAACCCA--ACUAUUUUCCACUUUU-AGUGGCAGAAAAUGUCUUUACUGGGUUUUUGCUUCGUUGAGUGCGUUUUAGGAACUCGUUU --------((((......((((((--((..((((((((....-.)))).))))...))......)))))).....))))..((((.(......)..)))).... ( -16.80, z-score = 0.09, R) >droYak2.chrX 18150464 93 - 21770863 --------CGAAAAUUACAAUCCA--ACUAUUUUCCACUUUU-AAUGGCAGAAAAUGUCUUUACUGGGUUUUUGCUUCGUUGAGUGCGUUUUAGGAACUCGUUU --------................--.(((....((((((..-...((((((((...((......)).)))))))).....))))).)...))).......... ( -14.30, z-score = 0.60, R) >droSec1.super_4 4276697 96 - 6179234 --------CGAAAAUUACAAGCCACAACUAUUUUCCAAGUUUUAGUGGCAGAAAAUGUCUUAACUGGGUUUUUGAUUCGCUGAGUGCGUUUUAGGAACUCGUUU --------............(((((((((........))))...)))))................((((((((((..(((.....)))..)))))))))).... ( -24.60, z-score = -1.87, R) >droSim1.chrX 3737890 94 + 17042790 --------CGAAAAUUACAAGCCA--ACUAUUUUCCAAGUUUUAGUGGCAGAAAAUGUCUUAACUGGGUUUUUGAUUCGCUGAGUGCGUUUUAGGAACUCGUUU --------............((((--.(((............)))))))................((((((((((..(((.....)))..)))))))))).... ( -22.20, z-score = -1.21, R) >droPer1.super_21 1628843 78 + 1645244 -------------------------UAGCAGUCGUAAGCCAU-AUUUGUUGUUGGUUUUAUGUGUGUGUUUUUUUUUUAUAAGAUGUAUUUUAGGAACUCGUCU -------------------------..(((..(((((((((.-.........))).))))))..)))..............(((((..(((...)))..))))) ( -10.20, z-score = -0.07, R) >dp4.chrXL_group1e 6616396 95 + 12523060 UACUAUAAGUAUGCAUAGUAUCUUUUAGCAGUCGUAAGCCAU-AUUUGUUGCUGGGUUUUU---UGUGU-----UUUUAUAAGAUGUAUUUUAGGAACUCGUCU ...((((((...((((((.((((..((((((..((.....))-..))))))..))))...)---)))))-----.))))))(((((..(((...)))..))))) ( -14.60, z-score = 0.68, R) >consensus ________CGAAAAUUACAAGCCA__ACUAUUUUCCACCUUU_AGUGGCAGAAAAUGUCUUAACUGGGUUUUUGAUUCGUUGAGUGCGUUUUAGGAACUCGUUU ..............................((((((((......)))).))))............(((((((((...(((.....)))...))))))))).... (-10.03 = -9.04 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:16:30 2011