| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,827,796 – 4,827,863 |
| Length | 67 |
| Max. P | 0.993313 |
| Location | 4,827,796 – 4,827,863 |
|---|---|
| Length | 67 |
| Sequences | 3 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 87.44 |
| Shannon entropy | 0.17054 |
| G+C content | 0.33795 |
| Mean single sequence MFE | -19.40 |
| Consensus MFE | -16.27 |
| Energy contribution | -16.50 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.10 |
| Mean z-score | -3.11 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.60 |
| SVM RNA-class probability | 0.993313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4827796 67 + 22422827 ACAUCGAUGCCAAACAUCGAUAUUUUCGAAAAAUCACAUAAAUUGGUGU---UUUUUGAUGAAUCAUUUU ..(((((((.....)))))))....((((((((.(((........))))---)))))))........... ( -15.00, z-score = -2.09, R) >droSec1.super_4 4263007 67 - 6179234 ACAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUGU---UUUUCGAGGAAUCAUCGU ..(((((((.....))))))).(((((((((((.(((........))))---))))))))))........ ( -20.70, z-score = -3.29, R) >droSim1.chrU 8383838 70 - 15797150 ACAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUUUGUUUUUUCGAGGAAUCAUCGU ..(((((((.....))))))).(((((((((((..((((((....)))))))))))))))))........ ( -22.50, z-score = -3.95, R) >consensus ACAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUGU___UUUUCGAGGAAUCAUCGU ..(((((((.....))))))).((((((((((..(((........)))....))))))))))........ (-16.27 = -16.50 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:16:29 2011