| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,826,158 – 4,826,220 |
| Length | 62 |
| Max. P | 0.997560 |
| Location | 4,826,158 – 4,826,220 |
|---|---|
| Length | 62 |
| Sequences | 3 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 88.54 |
| Shannon entropy | 0.15540 |
| G+C content | 0.34376 |
| Mean single sequence MFE | -19.40 |
| Consensus MFE | -16.27 |
| Energy contribution | -16.50 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.10 |
| Mean z-score | -3.72 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.13 |
| SVM RNA-class probability | 0.997560 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4826158 62 + 22422827 CAUCGAUGCCAAACAUCGAUAUUUUCGAAAAAUCACAUAAAUUGGUGU---UUUUUGAUGAAUCA .(((((((.....)))))))....((((((((.(((........))))---)))))))....... ( -15.00, z-score = -2.29, R) >droSim1.chrX 3732553 65 + 17042790 CAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUUUGUUUUUUCGAGGAAUCA .(((((((.....))))))).(((((((((((..((((((....))))))))))))))))).... ( -22.50, z-score = -4.78, R) >droSec1.super_4 4258596 62 - 6179234 CAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUGU---UUUUCGAGGAAUCA .(((((((.....))))))).(((((((((((.(((........))))---)))))))))).... ( -20.70, z-score = -4.10, R) >consensus CAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUGU___UUUUCGAGGAAUCA .(((((((.....))))))).((((((((((..(((........)))....)))))))))).... (-16.27 = -16.50 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:16:26 2011