| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,122,493 – 10,122,592 |
| Length | 99 |
| Max. P | 0.905965 |
| Location | 10,122,493 – 10,122,592 |
|---|---|
| Length | 99 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 62.64 |
| Shannon entropy | 0.67918 |
| G+C content | 0.65046 |
| Mean single sequence MFE | -49.79 |
| Consensus MFE | -12.44 |
| Energy contribution | -11.02 |
| Covariance contribution | -1.42 |
| Combinations/Pair | 2.00 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905965 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10122493 99 + 23011544 AGCGGCUGCGGUGGUGGUUUCUCCAUCGGCACUGGCCGCUGUGGUUACCUCUGCGGCAGCUGUGGUUA---CCUCCGGAGCAGCCGUGGUUGUGGUACAAUC------------------ .((((((((..(((.(((....(((.((((....(((((.(.((...)).).))))).)))))))..)---)).)))..))))))))(((((.....)))))------------------ ( -48.30, z-score = -2.70, R) >droSim1.chr2L 9913668 99 + 22036055 AGCGGCUGCGGUGGUGGUUUCUCCAUCGGCACUGGCCGCUGUGGUUGCCUCUGCGGCAGCUGUGGUGG---CCUCCGGAGCCGCCGUGGUUGUGACACAAUC------------------ .(((((..(((((((((.....)).((((....((((((((..((((((.....))))))..))))))---)).)))).)))))))..))))).........------------------ ( -55.70, z-score = -3.63, R) >droSec1.super_3 5560501 99 + 7220098 AGCAGCUGCGGUGGUGGUUUCUCCAUCGGCACUGGCCGCUGUGGUUGCCUCUGCGGCAGCUGUGGUGG---CCUCCGGAGCCGCCGUGGUUGUGACACAAUC------------------ .(((((..(((((((((.....)).((((....((((((((..((((((.....))))))..))))))---)).)))).)))))))..))))).........------------------ ( -56.50, z-score = -4.07, R) >droYak2.chr2L 12807240 99 + 22324452 AGCGGCGGCGGUGGUGGUUUCUUCAGCGGCACUGGCCGCAGUGGUCGUGUCCGUGUCAGUUGUGGGAG---CCGUGGUCUCCGGAGUGGCGGUGGCACAGUC------------------ .(((((..(((((.((.(......).)).)))))))))).......(((((..(((((.((.(((..(---(....))..))).)))))))..)))))....------------------ ( -37.50, z-score = 0.66, R) >droEre2.scaffold_4929 10737544 99 + 26641161 AGUGGCGGCGGUGGUGCUUUCUGCGGCGCCACCGGCAAUUGUGCUCGAUUCUGCGUCAGCUGGGGGGG---CCGCAGUCACCGGAGCGACUGUGACACAAUC------------------ (((.((..((((((......(((((((.((.(((((...(((((........))).))))))).)).)---))))))))))))..)).)))...........------------------ ( -45.30, z-score = -1.18, R) >droPer1.super_1 8736727 96 - 10282868 AGAGGCAGUGGUUGUCUCAGCGCCAGCG------GCUGCCGUAGUCUCUUCGGCGGCCACUGUCGUGACUUCAGCCGCUACCGUGGUGGUUGCCACGCACUC------------------ .(((((((((((((.....(((.(((.(------(((((((.((...)).)))))))).))).))).....))))))))...(((((....))))))).)))------------------ ( -49.50, z-score = -3.47, R) >dp4.chr4_group3 11619850 102 - 11692001 AGAGGCAGCGGUUGUCUCAGCGCCAGCGCCAGCGGCUGCCGUAGUCUCUUCGGCGGCCACUGUCGUGACUUCAGCCGCUACCGUGGUGGUUGCCACGCACUC------------------ .(((((((((((((..((((((....)))(((.((((((((.((...)).)))))))).)))...)))...))))))))...(((((....))))))).)))------------------ ( -50.90, z-score = -2.63, R) >droWil1.scaffold_181132 103149 120 + 1035393 AUCACUUGCCGUGGUGGUUUCAGCGGCACUGGAGGCCGCAGUGGUUGCUUCCGUUGCCGCUGUAGUGGUUUCCUCUGCUGCCGGUGCCACAGUGGUUGCUUCAGCCUCGGCCACACAUUC .......((((..(((((.((.((((((..(((((((((((((((.((....)).))))))))...)))))))..)))))).)).)))))...(((((...))))).))))......... ( -54.60, z-score = -2.54, R) >consensus AGCGGCUGCGGUGGUGGUUUCUCCAGCGGCACUGGCCGCUGUGGUCGCUUCUGCGGCAGCUGUGGUGG___CCGCCGCAGCCGCCGUGGUUGUGACACAAUC__________________ .(((((..((((.((...................)).))))..)))))...((((((.((..(.(((...........))).)..)).)))))).......................... (-12.44 = -11.02 + -1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:42 2011