| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,815,869 – 4,816,006 |
| Length | 137 |
| Max. P | 0.884381 |
| Location | 4,815,869 – 4,816,006 |
|---|---|
| Length | 137 |
| Sequences | 5 |
| Columns | 160 |
| Reading direction | reverse |
| Mean pairwise identity | 51.17 |
| Shannon entropy | 0.83069 |
| G+C content | 0.58009 |
| Mean single sequence MFE | -55.96 |
| Consensus MFE | -12.24 |
| Energy contribution | -13.80 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.71 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.22 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.884381 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4815869 137 - 22422827 AGUUCGCUCCCGGCGCUUCACAGGCGCUGGAAAAUCUUAACCGCCGGAAG-UCACUU-----CCGCUGGCUUUGAUU-----UUCCAGCGUCUGUCGAGCGGAA-----GGAGGGACUUGUUUG-----AGUCCAA-C-UACAGGAUACUGGGGGGCCCU .....((((((..(((((.(((((((((((((((((..(.(((.((((((-...)))-----))).))).)..))))-----))))))))))))).)))))...-----((..((((((....)-----)))))..-)-).(((....)))))))))... ( -72.10, z-score = -5.94, R) >droWil1.scaffold_180916 620961 150 + 2700594 --------CCCGCCCCUUGCCCGAGGGUGUGGAGCCGACACGACUGGAGGUCUACUUGAAUGCCGAAGACUUUCAAGUGG-CCUUGGGCUGCAGUCGGGCGGAAUUCGAGCAGCUGCCGAUUUGGAAGCAGACCAAGC-UAAAGAAGGAACGAGGACUCU --------((((..((((((((((..(((((.......)))(.((.((((.(((((((((...........)))))))))-)))).))).))..))))))((...(((.((....)))))((((....))))))....-.....))))..)).))..... ( -50.90, z-score = 0.59, R) >droSim1.chrX 3726443 118 - 17042790 ------------------CACCGGCGCUGGAGUUUCUUAACCGCCGGAAG-CUACUU-----CCGCCGGCUUCGAUG-----CUCCGGCUUCGGUCGAGCAGAA----GGGAGGGACUUGUUGG-----AGUCCAA-C-UACAGGACGCU--GGGGCCCU ------------------..(((((((((((((..(((..(((.((((((-...)))-----))).)))((((..((-----(((.(((....)))))))))))----).)))..))))(((((-----...))))-)-..)))..))))--))...... ( -53.10, z-score = -1.77, R) >droSec1.super_4 4250832 136 + 6179234 AUCUCGCUCCUUCCGCUUCACCGGCGCUGGAGUUUCUUAACCGCCGGAAG-CUACUU-----CCGCCGGCUUCGAUG-----CUCCGGCUUCGGUCGAGCAGAA----GGGAGGGACUUGUUGG-----AGUCCAA-C-UACAGGACACU--GGGGCCCU .......((((((.((((.(((((.((((((((.((..(.(((.((((((-...)))-----))).))).)..)).)-----))))))).))))).)))).)))----)))((((.((((((((-----...))))-)-..(((....))--)))))))) ( -63.50, z-score = -3.07, R) >droMoj3.scaffold_6500 18132787 142 - 32352404 ----CGCUUGCCAUCCUUGUCUAUCCCUGU--UGCUGUUGCUGUCGACCGCCCGCU---------GUGACUUUCACAAAAUAUUUUGGUUGUACGCAGUGCGGAUUCGUGCAAUUAUGGGCCUGUUUGUGGACAAUGUGUGUCGAAUGCUGAGCGAC--- ----(((((((((..((((((((((((...--....(((((...(((((((..(((---------(((((..(((.((....)).)))..)).))))))))))..))).)))))...))).......)))))))).)..))......)).)))))..--- ( -40.21, z-score = -0.24, R) >consensus ____CGCUCCCGCCCCUUCACCGGCGCUGGAGUGUCUUAACCGCCGGAAG_CUACUU_____CCGCCGGCUUUGAUG_____CUCCGGCUUCAGUCGAGCAGAA____GGGAGGGACUUGUUUG_____AGUCCAA_C_UACAGGACGCU__GGGGCCCU ..............((((.(((((.(((((((..........(((((..................)))))............))))))).))))).))))............................................................ (-12.24 = -13.80 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:57 2011