| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,808,644 – 4,808,708 |
| Length | 64 |
| Max. P | 0.772266 |
| Location | 4,808,644 – 4,808,708 |
|---|---|
| Length | 64 |
| Sequences | 5 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 90.62 |
| Shannon entropy | 0.16920 |
| G+C content | 0.53135 |
| Mean single sequence MFE | -18.14 |
| Consensus MFE | -17.70 |
| Energy contribution | -17.74 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.772266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4808644 64 + 22422827 UCCCGAAUUUAGAGUCGGCGGCAAGCUGCUGGUUCAGUUUGGUGUCUGUCUCCCACUUCCUGUU ..(((((((..((..((((((....))))))..)))))))))...................... ( -18.20, z-score = -1.11, R) >droAna3.scaffold_13417 166091 62 + 6960332 UCCCGUAUUGAGAGUCGGCGGCAAGCUGCUGGUUCGGUUUGGUGUCAGUCUUUAACCCAUUA-- ...........((..((((((....))))))..))((((.((.......))..)))).....-- ( -16.10, z-score = -0.32, R) >droYak2.chrX 18133832 64 - 21770863 UCCCGAAUUUAGAGUCGGCGGCAAGCUGCUGGUUCAGUUUGGUGUCUGUCUCCCACUUCCGGUU .((.(((....(((.(((((.(((((((......))))))).)).))).)))....))).)).. ( -20.00, z-score = -1.31, R) >droSec1.super_4 4243566 64 - 6179234 UCCCGAAUUUAGAGUCGGCGGCAAGCUGCUGGUUCAGUUUGGUGUCUGUCUCCCACUUCCUGUU ..(((((((..((..((((((....))))))..)))))))))...................... ( -18.20, z-score = -1.11, R) >droSim1.chrX 3718365 64 + 17042790 UCCCGAAUUUAGAGUCGGCGGCAAGCUGCUGGUUCAGUUUGGUGUCUGUCUCCCACUUCCUGUU ..(((((((..((..((((((....))))))..)))))))))...................... ( -18.20, z-score = -1.11, R) >consensus UCCCGAAUUUAGAGUCGGCGGCAAGCUGCUGGUUCAGUUUGGUGUCUGUCUCCCACUUCCUGUU ..(((((((..((..((((((....))))))..)))))))))...................... (-17.70 = -17.74 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:56 2011