| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,119,476 – 10,119,571 |
| Length | 95 |
| Max. P | 0.751467 |
| Location | 10,119,476 – 10,119,571 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 69.95 |
| Shannon entropy | 0.51992 |
| G+C content | 0.47329 |
| Mean single sequence MFE | -23.42 |
| Consensus MFE | -11.84 |
| Energy contribution | -12.44 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751467 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10119476 95 + 23011544 ------UACAUACACACUCGGCCCGCAUAAACGGAAAGGCCCGCGAAAGUGUGCUACAAUUUUAUUUCUCUGCCGCCGUUUGCGGCAUCCUUUUUAUUAUU ------.............((((((......)))...(((.(((....))).)))................)))((((....))))............... ( -24.40, z-score = -1.49, R) >droEre2.scaffold_4929 10734613 92 + 26641161 ------CACAUACACACUCGGUCCGCAUAAACGAAACGGCCCGCGAAAGUGUGCUACAAUUUUAUUUCGCUGCUGCCGCUUGCGACAUCCUUUUUAUU--- ------......(((((((((.(((...........))).)))....)))))).............((((.((....))..)))).............--- ( -19.40, z-score = -0.50, R) >droSec1.super_3 5557544 92 + 7220098 ------CACACACACACUCGGCCCGCAUAAACGGAAUGGCCCGCGAAAGUAUGCUACAAUUUUAUUUCGCUGCCGCCGUUUGCGGCAUCCUUUUUAUU--- ------.............((.(((((..(((((...(((..((((((..((......))....)))))).))).))))))))))...))........--- ( -25.70, z-score = -1.77, R) >droSim1.chr2L 9910686 92 + 22036055 ------CACACACACACUCGGCCCGCAUAAACGGAAUGGCCCGCGAAAGUGUGCUACAAUUUUAUUUCGCUGCCGCCGUUUGCGGCAUCCUUUUUAUU--- ------.............((.(((((..(((((...(((..((((((..((......))....)))))).))).))))))))))...))........--- ( -26.00, z-score = -1.38, R) >apiMel3.Group10 9578140 99 + 11440700 UUCUUCUGCA-ACGUCGUGAUCCAAUAGGACUCGAAUAGCCAUAAUAGCAGCAGCACCAGUUGCUACUGUUGCAUCCAUCAGUAUCA-CUUUAUAAUCUUU ......((((-((.(((.(.(((....)))).)))...........((.((((((....)))))).)))))))).............-............. ( -21.60, z-score = -1.84, R) >consensus ______CACACACACACUCGGCCCGCAUAAACGGAAUGGCCCGCGAAAGUGUGCUACAAUUUUAUUUCGCUGCCGCCGUUUGCGGCAUCCUUUUUAUU___ ............(((((((((.(((...........))).)))....)))))).................((((((.....)))))).............. (-11.84 = -12.44 + 0.60)
| Location | 10,119,476 – 10,119,571 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 69.95 |
| Shannon entropy | 0.51992 |
| G+C content | 0.47329 |
| Mean single sequence MFE | -28.20 |
| Consensus MFE | -17.46 |
| Energy contribution | -17.34 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.48 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.681428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10119476 95 - 23011544 AAUAAUAAAAAGGAUGCCGCAAACGGCGGCAGAGAAAUAAAAUUGUAGCACACUUUCGCGGGCCUUUCCGUUUAUGCGGGCCGAGUGUGUAUGUA------ ..............((((((.....))))))................((((((((.....((((....(((....))))))))))))))).....------ ( -28.00, z-score = -0.84, R) >droEre2.scaffold_4929 10734613 92 - 26641161 ---AAUAAAAAGGAUGUCGCAAGCGGCAGCAGCGAAAUAAAAUUGUAGCACACUUUCGCGGGCCGUUUCGUUUAUGCGGACCGAGUGUGUAUGUG------ ---...........(((((....)))))(((((((.......)))).(((((((....(((.((((.........)))).)))))))))).))).------ ( -24.60, z-score = 0.08, R) >droSec1.super_3 5557544 92 - 7220098 ---AAUAAAAAGGAUGCCGCAAACGGCGGCAGCGAAAUAAAAUUGUAGCAUACUUUCGCGGGCCAUUCCGUUUAUGCGGGCCGAGUGUGUGUGUG------ ---..........((((((((..(((((((.((((((................))))))..)))...((((....))))))))..)))).)))).------ ( -31.39, z-score = -1.37, R) >droSim1.chr2L 9910686 92 - 22036055 ---AAUAAAAAGGAUGCCGCAAACGGCGGCAGCGAAAUAAAAUUGUAGCACACUUUCGCGGGCCAUUCCGUUUAUGCGGGCCGAGUGUGUGUGUG------ ---..........((((((((..(((((((.((((((................))))))..)))...((((....))))))))..)))).)))).------ ( -31.39, z-score = -1.18, R) >apiMel3.Group10 9578140 99 - 11440700 AAAGAUUAUAAAG-UGAUACUGAUGGAUGCAACAGUAGCAACUGGUGCUGCUGCUAUUAUGGCUAUUCGAGUCCUAUUGGAUCACGACGU-UGCAGAAGAA ............(-((((.(..((((......((((((((.....)))))))).......((((.....))))))))..)))))).....-.......... ( -25.60, z-score = -1.16, R) >consensus ___AAUAAAAAGGAUGCCGCAAACGGCGGCAGCGAAAUAAAAUUGUAGCACACUUUCGCGGGCCAUUCCGUUUAUGCGGGCCGAGUGUGUAUGUG______ ..............((((((.....))))))................((((((((.....(((....((((....)))))))))))))))........... (-17.46 = -17.34 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:41 2011