| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,799,841 – 4,799,934 |
| Length | 93 |
| Max. P | 0.955640 |
| Location | 4,799,841 – 4,799,934 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 76.63 |
| Shannon entropy | 0.44970 |
| G+C content | 0.33348 |
| Mean single sequence MFE | -19.07 |
| Consensus MFE | -12.38 |
| Energy contribution | -12.92 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.955640 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4799841 93 + 22422827 UUUCAAUAUGGGCUUUAUUACUAUGCUGUGAUAAAUU-GAACAUUUAUUAUUGCAUACUCCUGAGUCC-UUUUCCAGUUAUUUGAAAUCCCUAGA ((((((...((((((......(((((.(((((((((.-....))))))))).))))).....))))))-............))))))........ ( -19.26, z-score = -2.40, R) >droEre2.scaffold_4690 2172848 93 + 18748788 UUUCAAUAUGGGCUUGAUUACUAUGCUGUGAUAAAUU-GAACAUUUAUUAUUGCAUACUCCUAAGUCC-UUAUCCAGUUAUUUGAAAUCCCUAGA ((((((...(((((((.....(((((.(((((((((.-....))))))))).)))))....)))))))-............))))))........ ( -19.36, z-score = -2.29, R) >droYak2.chrX 18125190 92 - 21770863 UUUCAGUAUGGGCUUUAUUACUAUGCUGUGAUAA--UGGAACAUUUAUUAUCGCAUACACCCAAGUCC-UUUUCCGGUUACUUGAAAUCCCUAGA ....(((((((.........)))))))(((((((--((((...))))))))))).......(((((((-......))..)))))........... ( -20.00, z-score = -1.63, R) >droSec1.super_4 4234882 94 - 6179234 UUUCAAUGUGGGCUUUAUUACUAUGCUGUGAUAAAUUUGAACAUUUAUUAUUGCAUACUCCUGAGUCC-UUUUCCGGUUAUUUGAAAUCCCUAGA ((((((...((((((......(((((.(((((((((......))))))))).))))).....))))))-............))))))........ ( -19.46, z-score = -2.12, R) >droSim1.chrX 3709042 94 + 17042790 UUUCAAUGUGGGCUUUAUUACUAUGCUGUGAUAAAUUUGAACAUUUAUUAUUGCAUACUCCUGAGUCC-UUUUCCGAUUAUUUGAAAUCCCUAGA ((((((...((((((......(((((.(((((((((......))))))))).))))).....))))))-............))))))........ ( -19.46, z-score = -2.67, R) >droVir3.scaffold_12970 8022885 92 - 11907090 UUAUGCGAUGAAUUUCACGAUUUCUCUAAAAGCAGCU-GUAGAUUUCUGCUUCUUCAAUUUCGAGUUAAUUUUGUAGCAAUCUGGCAGCACAA-- ...(((((......))..((....)).....)))(((-(((((((.((((.......................)))).))))).)))))....-- ( -16.90, z-score = 0.37, R) >consensus UUUCAAUAUGGGCUUUAUUACUAUGCUGUGAUAAAUU_GAACAUUUAUUAUUGCAUACUCCUGAGUCC_UUUUCCAGUUAUUUGAAAUCCCUAGA .........((((((......(((((.(((((((((......))))))))).))))).....))))))........................... (-12.38 = -12.92 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:54 2011