| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,799,076 – 4,799,170 |
| Length | 94 |
| Max. P | 0.876446 |
| Location | 4,799,076 – 4,799,170 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 60.65 |
| Shannon entropy | 0.76535 |
| G+C content | 0.68677 |
| Mean single sequence MFE | -37.67 |
| Consensus MFE | -22.17 |
| Energy contribution | -24.77 |
| Covariance contribution | 2.60 |
| Combinations/Pair | 1.59 |
| Mean z-score | -0.26 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.876446 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4799076 94 - 22422827 CUGUUGCCGGGAGUGGUCACUUCGCCCGAACCGGGCAUUCCCGUCGAUGU-GUUGGCGGGCGUGUAGGCGGGGGCGGGGGUGGGUGCCAGGCGGG ...(((((..(.(((.(((((((((((...(((.((((.((((((((...-.)))))))).))))...))))))).))))))).)))).))))). ( -45.10, z-score = -1.12, R) >droEre2.scaffold_4690 2172065 94 - 18748788 CUGUUGCCGGGAGUGGUCACCUCGCCGGAUCCGGGUAUUCCCGUCGAAGU-GUUGGCGGGCGUGUAGGCGGGGGCAGGGGUGGGGGCCAGGCGGG ...(((((..(.((..((((((((((...((((..(((.((((((((...-.))))))))...)))..))))))).)))))))..))).))))). ( -40.10, z-score = -0.11, R) >droSec1.super_4 4234112 94 + 6179234 CUGUUGCCGGGAGUGGUCACUUCGCCGGAACCGGGCAUUCCCGUCGAAGU-GUUGGCGGGCGUGUAGGCGGGGGCGGGGGUGGGUGCCAGGCGGG ...(((((..(.(((.((((((((((....(((.((((.((((((((...-.)))))))).))))...))).))).))))))).)))).))))). ( -42.50, z-score = -0.83, R) >droSim1.chrX 3708268 94 - 17042790 CUGUUGCCGGGAGUGGUCACUUCGCCGGAACCGGGCAUUCCCGUCGAAUU-GUUGGCGGGCGUGUAGGCGGGGGCGGGGGUGGGUGCCAGGCGGG ...(((((..(.(((.((((((((((....(((.((((.((((((((...-.)))))))).))))...))).))).))))))).)))).))))). ( -42.50, z-score = -0.93, R) >droWil1.scaffold_181096 8157768 82 + 12416693 CUGGGAUUAUUGGGUGAGGGAUUGACAUCACCAAGCAUUGCUGCCGCUGCAGUGGGCGUAUAUGCAGGUGCUGCCAAACGUG------------- .(((........(((((.(......).))))).(((((((((((....)))))..(((....))).)))))).)))......------------- ( -23.10, z-score = 1.17, R) >anoGam1.chr2R 31261916 90 - 62725911 ---GCAUCAUCAUCGGCUGC-CCAACACCAACGGGCCCAACGUCCGAGAGGGAUGUGGCACGGUCCAGCAGCUCCGACGACAGGCCCGGGCCGG- ---..........((((((.-....).....((((((...((((.(((..((((........)))).....))).))))...))))))))))).- ( -32.70, z-score = 0.23, R) >consensus CUGUUGCCGGGAGUGGUCACUUCGCCGGAACCGGGCAUUCCCGUCGAAGU_GUUGGCGGGCGUGUAGGCGGGGGCGGGGGUGGGUGCCAGGCGGG ....((((....(((.((((((((((....(((.((((.((((((((.....)))))))).))))...))).))))))).))).)))..)))).. (-22.17 = -24.77 + 2.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:53 2011