| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,759,334 – 4,759,439 |
| Length | 105 |
| Max. P | 0.600762 |
| Location | 4,759,334 – 4,759,439 |
|---|---|
| Length | 105 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 89.67 |
| Shannon entropy | 0.20969 |
| G+C content | 0.35656 |
| Mean single sequence MFE | -29.65 |
| Consensus MFE | -19.50 |
| Energy contribution | -18.84 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600762 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4759334 105 - 22422827 GUUGUUGCUCAAGUAUUUAUUUUGCUUGAGUGCGCUACAGUUUUUAAGUUUGUUUGCACUG----------AAAACUCAAGGCACAACUUGCAAAUAUUCAUUACAAACAAACAA- ((.((((((((((((.......)))))))))).)).)).........(((((((((...((----------((....((((......))))......))))...)))))))))..- ( -27.20, z-score = -2.02, R) >droSim1.chrX 3671330 105 - 17042790 GUUGUUGCUCAAGUAUUUAUUUUGCUUGAGUGCGCUACAGUUUUUAAGUUUGUUUGCACUG----------AAAACUCAAGGCACAACUUGCAAAUAUUCAUUACAAACAAACAA- ((.((((((((((((.......)))))))))).)).)).........(((((((((...((----------((....((((......))))......))))...)))))))))..- ( -27.20, z-score = -2.02, R) >droSec1.super_4 4195255 105 + 6179234 GUUGUUGCUCAAGUAUUUAUUUUGCUUGAGUGCGCUACAGUUUUUAAGUUUGUUUGCACUG----------AAAACUCAGGGCACAACUUGCAAAUAUUCAUUACAAACAAACAA- ((.((((((((((((.......)))))))))).)).)).........(((((((((..(((----------(....)))).(((.....)))............)))))))))..- ( -28.00, z-score = -2.18, R) >droYak2.chrX 18083602 105 + 21770863 GUUGUUGCUCAAGUAUUUAUUUUGCUUGAGUGCGCUACACUUUUUAAGUUUGUUUGCACUG----------AAAACUCAAGGCACAACUUGCAAAUAUUCAUUACAAACAAACAA- ((.((((((((((((.......)))))))))).)).)).........(((((((((...((----------((....((((......))))......))))...)))))))))..- ( -27.20, z-score = -2.45, R) >droEre2.scaffold_4690 2128091 105 - 18748788 GUUGUUGCUCAAGUAUUUAUUUUGCUUGAGUGCGCUACAGUUUUUAAGUUUGUUUGCACUG----------AAAACUCAAGGCACAACUUGCAAAUAUUCAUUACAAACAAACAA- ((.((((((((((((.......)))))))))).)).)).........(((((((((...((----------((....((((......))))......))))...)))))))))..- ( -27.20, z-score = -2.02, R) >dp4.chrXL_group1a 7167882 105 - 9151740 GCUGUUGCUCAAGUAUUUAUUUUGCUUGAGUGCGCUACAGUUUUUAAGUUUGUUUGCACUG----------AAAACUCAAGGCACAACUUGCAAAUAUUCAUUACAAACAAACAC- (((((.(((((((((.......))))))))).....)))))......(((((((((...((----------((....((((......))))......))))...)))))))))..- ( -29.30, z-score = -2.65, R) >droPer1.super_13 1777726 105 - 2293547 GCUGUUGCUCAAGUAUUUAUUUUGCUUGAGUACGCUACAGUUUUUAAGUUUGUUUGCACUG----------AAAACUCAAGGCACAACUUGCAAAUAUUCAUUACAAACAAACAC- (((((((((((((((.......))))))))))....)))))......(((((((((...((----------((....((((......))))......))))...)))))))))..- ( -30.40, z-score = -3.69, R) >droWil1.scaffold_181096 8104952 113 + 12416693 GCUAUUGCUCGAGUAUUUAUUUUGCUUGAGUGCGCUACAGUUUUUAAGUUUGUUUGCGCUGUGUUUGCACUGAAACUCAAGGCACAACUUGCAAAUAUUCAUUACACAUACAU--- ((....))..((((((((......(((((((((((.((((.........))))..)))).(((....)))....)))))))(((.....))))))))))).............--- ( -28.60, z-score = -1.06, R) >droVir3.scaffold_12970 3943346 115 - 11907090 GUUGUUGCUCAAGUAUUUAUUUUGCCUGAGUGCGCUACAGUUUUUAAGUUUGUUUGCGCUGUGUUUGCUGCGAAGCUGAAGGCACAACUUGCAAAUAUUCAUUGCAAACACACAG- ......(((((.(((.......))).)))))((((.((((.........))))..))))(((((((((...(((.......(((.....))).....)))...)))))))))...- ( -31.00, z-score = 0.06, R) >droGri2.scaffold_15203 2024334 116 + 11997470 GUUGCUACUCAGGUAUUUAUGUUGCCUGAGUGCGCUACAGUUUUUAAGUUUGUUUGCACUGUGUUUGCAGCGAAAGUCGAGGCACAACUUGCAAAUAUUCAUUACAAACACACACC ((.((((((((((((.......)))))))))).)).)).((((.((((..((((((((.(((((((.(.((....)).))))))))...))))))))..).))).))))....... ( -40.40, z-score = -3.70, R) >consensus GUUGUUGCUCAAGUAUUUAUUUUGCUUGAGUGCGCUACAGUUUUUAAGUUUGUUUGCACUG__________AAAACUCAAGGCACAACUUGCAAAUAUUCAUUACAAACAAACAA_ ((.((.(((((((((.......)))))))))))))....((((.((((..((((((((...............................))))))))..).))).))))....... (-19.50 = -18.84 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:49 2011