| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,747,545 – 4,747,629 |
| Length | 84 |
| Max. P | 0.573818 |
| Location | 4,747,545 – 4,747,629 |
|---|---|
| Length | 84 |
| Sequences | 5 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 92.62 |
| Shannon entropy | 0.13188 |
| G+C content | 0.48943 |
| Mean single sequence MFE | -24.52 |
| Consensus MFE | -22.36 |
| Energy contribution | -22.08 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.573818 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4747545 84 + 22422827 GGACUGUUUACAUACCCACUUUUGUGGUCACGAUUAUCACUGUUUGUGACAGUUGUUGGACAGUCGACGAAGGCCACGGGGAAG .(((((((((.....((((....))))..((((((.((((.....)))).)))))))))))))))........((....))... ( -24.60, z-score = -0.87, R) >droSim1.chrX 3660064 84 + 17042790 GGACUGUUUACAUGCCCACUUUUGUGGUCACGAUUAUCACUGUUUGUGACAGUUGUUGGACAGCCGACGAAGGCCACAGGGAAG ..............(((.....(((((((..((((.((((.....)))).))))(((((....)))))...))))))))))... ( -25.20, z-score = -1.07, R) >droSec1.super_4 4184000 75 - 6179234 ---------ACAUGCCCACUUUUGUGGUCACGAUUAUCACUGUUUGUGACAGUUGUUGGACAGCCGACGAAGGCCACAGGGAAG ---------.....(((.....(((((((..((((.((((.....)))).))))(((((....)))))...))))))))))... ( -25.20, z-score = -2.01, R) >droYak2.chrX 18071977 84 - 21770863 GGACUGUUUACAUACCCUCUUUUGUGGUCACGAUUAUCACUGUUUGUGACAGUUGUUGGACAGCCGACGAAGGCCACAGGAAAG ((..((....))..))((.((((((((((..((((.((((.....)))).))))(((((....)))))...)))))))))).)) ( -25.00, z-score = -1.50, R) >droEre2.scaffold_4690 2116508 84 + 18748788 GGACUGUUUACAUACCCACUUUUGUGGUCACGAUUAUCACUGUUUGUGACAGUUGUUGGACAGCCGACGAAGGACACAGGGAAG ((.(((((((.....((((....))))..((((((.((((.....)))).)))))))))))))))..(....)........... ( -22.60, z-score = -0.69, R) >consensus GGACUGUUUACAUACCCACUUUUGUGGUCACGAUUAUCACUGUUUGUGACAGUUGUUGGACAGCCGACGAAGGCCACAGGGAAG ...................((((((((((..((((.((((.....)))).))))(((((....)))))...))))))))))... (-22.36 = -22.08 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:47 2011