Locus 13160

Sequence ID dm3.chrX
Location 4,721,369 – 4,721,467
Length 98
Max. P 0.986347
window18087

overview

Window 7

Location 4,721,369 – 4,721,467
Length 98
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 80.92
Shannon entropy 0.33645
G+C content 0.44494
Mean single sequence MFE -23.59
Consensus MFE -21.82
Energy contribution -21.34
Covariance contribution -0.48
Combinations/Pair 1.27
Mean z-score -1.98
Structure conservation index 0.92
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.23
SVM RNA-class probability 0.986347
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 4721369 98 - 22422827
---CACCAUUUCUACUUACUCU-CACUUACCUUGCUUCACUGGUUCCUUUGGUUGUCCGGCAACUAUUGUUGCUGGAUAUUUAGCAUUAGCUGGUGUCCGAU
---...................-........(((...(((..(((...((((.(((((((((((....))))))))))).))))....)))..)))..))). ( -25.80, z-score =  -2.73, R)
>droEre2.scaffold_4690 2097259 102 - 18748788
CCACUUUCCACUCAGCCACUACUUACAUAUUUUGCUUCACUGGUUCUUUUGGUUGUCCAGCAACUUUUGUUGUUGGGUAUUUAGCAUUAGUUCGUGCCCGGU
.......((...((((((..(((..................))).....))))))(((((((((....)))))))))......((((......))))..)). ( -20.37, z-score =  -0.38, R)
>droYak2.chrX 18052739 94 + 21770863
-------CUAUUUACCCAUUGC-UACUUACCUCGCAUCACUGCUUCCAUUGGUUGUCCGGCAACUAUUGUUGCUCGAUAUUUAGCAUUAACUGGUGUCCGAU
-------.....((((...(((-((........(((....)))..........((((.((((((....)))))).))))..)))))......))))...... ( -20.20, z-score =  -1.70, R)
>droSec1.super_4 4165622 98 + 6179234
---CCCCAUUUCUACUUACCUC-CACUUACCUUGCUUCACUGGUUCCUUUGGUUGUCCGGCAACUAUUGUUGCUGGAUAUUUAGCAUUAGCUGGUGUCCGAU
---...................-........(((...(((..(((...((((.(((((((((((....))))))))))).))))....)))..)))..))). ( -25.80, z-score =  -2.55, R)
>droSim1.chrX 3643787 98 - 17042790
---CCCCAUUUCUACUUACCUC-CACUUACCUUGCUUCACUGGUUCCUUUGGUUGUCCGGCAACUAUUGUUGCUGGAUAUUUAGCAUUAGCUGGUGUCCGAU
---...................-........(((...(((..(((...((((.(((((((((((....))))))))))).))))....)))..)))..))). ( -25.80, z-score =  -2.55, R)
>consensus
___CCCCAUUUCUACUUACUUC_CACUUACCUUGCUUCACUGGUUCCUUUGGUUGUCCGGCAACUAUUGUUGCUGGAUAUUUAGCAUUAGCUGGUGUCCGAU
...............................(((...((((((((...((((.(((((((((((....))))))))))).))))....))))))))..))). (-21.82 = -21.34 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:44 2011