| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,719,615 – 4,719,666 |
| Length | 51 |
| Max. P | 0.537219 |
| Location | 4,719,615 – 4,719,666 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 90.20 |
| Shannon entropy | 0.13911 |
| G+C content | 0.57516 |
| Mean single sequence MFE | -17.53 |
| Consensus MFE | -17.46 |
| Energy contribution | -16.80 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.11 |
| Mean z-score | -0.59 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.537219 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4719615 51 - 22422827 ACUCGCAUUUUCCCCGGCUGCAGAGCUCUUUGGGGGUGGAAAGUGGGUGGA ((((((.((((((((((((....)))).....)))).)))).))))))... ( -17.30, z-score = -0.20, R) >droEre2.scaffold_4690 2095513 51 - 18748788 ACUCGCAUUUUACCCGGCUUCAGAGCUCUGCGGGGUUGAAAAGUGGGUGGA ((((((.((((((((.((...........)).))).))))).))))))... ( -18.10, z-score = -1.43, R) >droSim1.chrX 3642044 51 - 17042790 ACUCGCAUUUUCCCCGGCUACCGAGCUCUUUGGGGGUGGAAAGUGGGUGGA ((((((.((((((((((((....)))).....)))).)))).))))))... ( -17.20, z-score = -0.13, R) >consensus ACUCGCAUUUUCCCCGGCUACAGAGCUCUUUGGGGGUGGAAAGUGGGUGGA ((((((.((((((((((((....)))).....)))).)))).))))))... (-17.46 = -16.80 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:43 2011