| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,719,065 – 4,719,169 |
| Length | 104 |
| Max. P | 0.974707 |
| Location | 4,719,065 – 4,719,169 |
|---|---|
| Length | 104 |
| Sequences | 7 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 66.85 |
| Shannon entropy | 0.67423 |
| G+C content | 0.47306 |
| Mean single sequence MFE | -24.80 |
| Consensus MFE | -12.93 |
| Energy contribution | -15.14 |
| Covariance contribution | 2.21 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.974707 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4719065 104 + 22422827 UUUCCCCCGUCCCUGGAUCUACACGGAGACCCCCAAACCCACUUUUGAACCUGCUGCAGUGCA--CUGAAAACUGCAGGAAAAUAAGAACUAUACGAGAGUGGGUC ........(((((((......)).)).)))......(((((((((((......(((((((...--......)))))))....(((.....))).))))))))))). ( -30.90, z-score = -2.96, R) >droAna3.scaffold_13417 54998 101 + 6960332 -UUUUUUCUGCAUUGCAAGUUUCUGAAUAA-AAAAAAAACAUACUUAUAUAUGAAAAAAAGAAAGCUGAGAA-AGCAGCGGAGUGUGGGCGG--CGAAUGUGAAAA -..(((((.(((((((..(((....)))..-........(((((((.....(....).......((((....-..)))).)))))))....)--).)))))))))) ( -16.70, z-score = 0.26, R) >droEre2.scaffold_4690 2094950 104 + 18748788 UUUCCCCUGCCCCUGGAUCUACUCGGAGACCCCCAAACCCACUUUUGAACCUGCUGCAGUGCA--CUGAAAACUGCAGGAAAAUAAGAGCUAUACGAGAGUGGGUC ..............((.(((......))).))....(((((((((((......(((((((...--......)))))))....(((.....))).))))))))))). ( -27.70, z-score = -1.50, R) >droYak2.chrX 18050468 104 - 21770863 UUUCUCCCGCCCCUGGAUCCACUCGGAGACCCCCAAACCCACUUUUGAACCUGCUGCAGUGCA--CUGAAAACUGCAGGAAAAUAAGAACUAUACGAGAGUGGGUC ..(((((......((....))...))))).......(((((((((((......(((((((...--......)))))))....(((.....))).))))))))))). ( -30.20, z-score = -2.56, R) >droSec1.super_4 4163023 104 - 6179234 UUUCCCCCGCCCCUGGAUCUACUCGGAGACCCCCAAACCCACUUUUGAACCUGCUGCAGUGCA--CUGGAAACUGCAGGAAAAUAAGAACUAUACGAGAGUGGGUC ..............((.(((......))).))....(((((((((((......(((((((...--......)))))))....(((.....))).))))))))))). ( -27.70, z-score = -1.37, R) >droSim1.chrX 3641496 104 + 17042790 UUUCCCCCGCCCCUGGAUCUACUCGGAGACCCCCAAACCCACUUUUGAACCUGCUGCAGUGCA--CUGGAAACUGCAGGAAAAUAAGAACUAUACGAGAGUGGGUC ..............((.(((......))).))....(((((((((((......(((((((...--......)))))))....(((.....))).))))))))))). ( -27.70, z-score = -1.37, R) >droWil1.scaffold_181096 8056602 84 - 12416693 ---------------------UUUCAACAGCAGGAGCAGCA-UCUCGUUUCUGGUGCAAUGCAAGUCAAAAGUGGUACAAAAAUAAAACAGAAACUAAAGUGAAAA ---------------------(((((....(((((((....-....)))))))((((...((.........)).))))......................))))). ( -12.70, z-score = 0.27, R) >consensus UUUCCCCCGCCCCUGGAUCUACUCGGAGACCCCCAAACCCACUUUUGAACCUGCUGCAGUGCA__CUGAAAACUGCAGGAAAAUAAGAACUAUACGAGAGUGGGUC ....................................(((((((((((......(((((((...........)))))))....(((.....))).))))))))))). (-12.93 = -15.14 + 2.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:43 2011