| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,714,897 – 4,714,988 |
| Length | 91 |
| Max. P | 0.710113 |
| Location | 4,714,897 – 4,714,988 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 63.36 |
| Shannon entropy | 0.71850 |
| G+C content | 0.49569 |
| Mean single sequence MFE | -21.40 |
| Consensus MFE | -8.88 |
| Energy contribution | -10.27 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.41 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.710113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4714897 91 + 22422827 AAUCGAUGACUUUCUGAUAGCCUCGAUUGCACU----UCCUUCACUUAUUUCCCAGC---CCAAUCGCUGC-UCGAUUCACGCCUCAUUUGAGUGGGGC----- ((((((...(.....)...((..((((((..((----.................)).---.))))))..))-))))))...(((((((....)))))))----- ( -18.13, z-score = -0.04, R) >droAna3.scaffold_13417 51732 104 + 6960332 AAUCGAUUGGCACUCAAGACUUUUGAUUGCACUUGGCCCCCACUUGCCACCCCCUGUAUGCCACCCCCUGCCUCCUUUCACGCCUCAUUUGAGGAAGGCAAAAA .......(((((.(((((...))))).((((..((((........)))).....))))))))).....(((((((((.............)))).))))).... ( -22.22, z-score = -0.75, R) >droEre2.scaffold_4690 2091409 93 + 18748788 AAUCGAUGACUUUCUGAUAGUCUCGAUUGCACUUC-UACUCCUACUUAGUGCCCACC---CCAAUUGCUGC-UCGAUUCACGCCUCAUUUGAGUGGGC------ ((((((.((((.......)))))))))).......-..............((((((.---.(((.((..((-.........))..)).))).))))))------ ( -23.00, z-score = -2.33, R) >droYak2.chrX 18046590 92 - 21770863 AAUCGAUGACUUUCUGAUAGUCUCGAUUGCACUUG----CCUCUACUUAUUUCCCGCC--CCAAUUGCUGC-UCGAUUCACGCCUCAUUUGAGUGGGGC----- ((((((.((((.......))))))))))......(----((.(((((((......((.--..(((((....-.)))))...))......))))))))))----- ( -22.80, z-score = -1.81, R) >droSec1.super_4 4159439 85 - 6179234 AAUCGAUGACUUUCUGAUAGUCUCGAUU----------CCCCCUCCUAUUUCCCAGU---CCAAUCGCUGC-UCGAUUCACGCCUCAUUUGAGUGGGGC----- ((((((.((((.......))))))))))----------(((((((........((((---......)))).-..((........))....))).)))).----- ( -20.50, z-score = -1.15, R) >droSim1.chrX 3637900 95 + 17042790 AAUCGAUGACUUUCUGAUAGUCUCGAUUGCACUCGAUUCCCCCUCCUAUUUCCCAGU---CCAAUCGCUGC-UCGAUUCACGCCUCAUUUGAGUGGGGC----- ((((((.((((.......)))).((((((.(((.((..............))..)))---.))))))....-))))))...(((((((....)))))))----- ( -22.24, z-score = -0.82, R) >droGri2.scaffold_15203 9932397 93 + 11997470 AAUCGAUUGUCAGCUACAGUCGAUUACACGGCUCGCAACUUUUGUGGCUUAGAGGAUGCCUUGAAUAUUGU-CCGAUUCACGCUUCAUUUCGGC---------- ((((((((((.....))))))))))...(((...((((..((((.(((.........))).))))..))))-)))...................---------- ( -20.90, z-score = 0.11, R) >consensus AAUCGAUGACUUUCUGAUAGUCUCGAUUGCACUUG___CCCCCUCCUAUUUCCCAGU___CCAAUCGCUGC_UCGAUUCACGCCUCAUUUGAGUGGGGC_____ ((((((.((((.......)))))))))).....................................................(((((((....)))))))..... ( -8.88 = -10.27 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:42 2011