| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,703,917 – 4,704,011 |
| Length | 94 |
| Max. P | 0.623666 |
| Location | 4,703,917 – 4,704,011 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 63.19 |
| Shannon entropy | 0.63517 |
| G+C content | 0.51687 |
| Mean single sequence MFE | -17.54 |
| Consensus MFE | -4.98 |
| Energy contribution | -4.61 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.623666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4703917 94 + 22422827 UCAUUCCCCUAUUCACCCACCUAUUCCACCCAUUUCCAAUCCGGGUGAUCCAGCUCUC--CGGCCGUAUUCGUACGUGAGCUCGUAUAUUUUACGU ............((((((........................))))))...(((((..--((..((....))..)).)))))((((.....)))). ( -19.46, z-score = -2.77, R) >droSec1.super_4 4148808 75 - 6179234 -------------------CCUAUUCCGCCCGUUUCCAAUCCGGGUGAUCCAGCUCUC--CGGCCGUAUUCGUACGUGAGCUCGUAUAUUUUACGU -------------------.......((((((.........))))))....(((((..--((..((....))..)).)))))((((.....)))). ( -20.70, z-score = -2.23, R) >droEre2.scaffold_4690 2080648 76 + 18748788 ------------------CACCUCCCCCUCCGUUCACAAUCCGCUUGAUCCAGCUCUC--CGGCCGUAUUCGUACGUGAGCUCGUAUAUUUUACGU ------------------.............((((((.....(((.((........))--.))).(((....))))))))).((((.....)))). ( -13.90, z-score = -1.59, R) >droYak2.chrX 18034946 77 - 21770863 -----------------GCAAUACCCCAUCCAUUCCCAAUCCGGGUGAUCCAGCUCUC--CGGCCGUAUUCGUACGUGAGCUCGUAUAUUUUACGU -----------------.........(((((...........)))))....(((((..--((..((....))..)).)))))((((.....)))). ( -16.40, z-score = -1.11, R) >dp4.chrXL_group1a 7114758 79 + 9151740 ----------------CCCGCCCCAAAGAGCCACCCUUUC-GCCUAUAUCCACCUCUCAGUCGGUGGAUCCGUACGUGAGCUCGUAUAUUUUACGU ----------------...........((((.......((-((.((((((((((........)))))))..))).))))))))(((.....))).. ( -20.01, z-score = -2.66, R) >droPer1.super_13 1722009 79 + 2293547 ----------------CCCUCCCCAAAGAACCACCCUUUC-GCCUAUAUCCACCUCUCAGUCGGUGGAUCCGUACGUGAGCUCGUAUAUUUUACGU ----------------.....................(((-((.((((((((((........)))))))..))).)))))..((((.....)))). ( -17.20, z-score = -2.32, R) >droWil1.scaffold_181096 8036690 80 - 12416693 -------------CCACCUACGGUUCAGCCCCACUUUUGCUACCUAAAUCCACCGUU---UUGGGCUUUACGUACGUGUUCUCGUAUAUUUUACGU -------------.(((.((((....(((((..........................---..)))))...)))).)))....((((.....)))). ( -15.09, z-score = -1.09, R) >consensus ________________CCCACCACUCCGCCCCUUCCCAAUCCGCUUGAUCCAGCUCUC__CGGCCGUAUUCGUACGUGAGCUCGUAUAUUUUACGU ....................................................(((......))).......(((((......)))))......... ( -4.98 = -4.61 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:38 2011