| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,688,837 – 4,688,928 |
| Length | 91 |
| Max. P | 0.701318 |
| Location | 4,688,837 – 4,688,928 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 65.10 |
| Shannon entropy | 0.64361 |
| G+C content | 0.40419 |
| Mean single sequence MFE | -21.12 |
| Consensus MFE | -7.19 |
| Energy contribution | -8.42 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.701318 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4688837 91 - 22422827 AUCAUAAAUACCCUGCAAAAGCGCAGAAACUUGGACCAUAAACGAAUGGCUCAUAUCGUUCAAUUAGGUC-GUAAAAUACAAGUAUUUGGCA---------- ....(((((((.((((......)))).......((((.(((..((((((......))))))..)))))))-...........)))))))...---------- ( -19.50, z-score = -1.88, R) >droEre2.scaffold_4690 2062223 95 - 18748788 AUCAU-AAUACCCUGCAAUAGCGCAGAGACUUGGAACAUAAACGAAUGGCUCAUAUCGUUCAAUUAGGUC-GUAAAAUAUAAGUACUUUGCGGGAAC----- .....-....(((.((....))(((((((((((((...(((..((((((......))))))..)))..))-........))))).)))))))))...----- ( -20.20, z-score = -1.29, R) >droYak2.chrX 18014633 83 + 21770863 -------------AUCAAAAGCGCACAACCUUGGGCCAUAAACGAAUGGUUUAUAUGGUUCAAUUAGGUC-GUAAAAUACAAGUAUUUUGCGGGAGA----- -------------.((...........((((((((((((((((.....)))..)))))))))...))))(-((((((((....))))))))).))..----- ( -21.40, z-score = -2.40, R) >droSec1.super_4 4131003 85 + 6179234 AUCAU-AAUACCCUGCAAAAGCGCAGAAACUUG----------GAAUGGCACAUAUCGUUCAAUUAGGUC-GUAAAAUACAAGUAUUUUGCGGGACA----- .....-....(((.((....))(((((((((((----------((((((......))))))..(((....-.)))....))))).)))))))))...----- ( -19.40, z-score = -1.68, R) >droSim1.chrX_random 1665675 85 - 5698898 AUCAU-AAUACCCUGCAAAAGCGCAGAAACUUG----------GAAUGGCACAUAUCGUUCAAUUAGGUC-GUAAAAUACAAGUAUUUUGCGGGACA----- .....-....(((.((....))(((((((((((----------((((((......))))))..(((....-.)))....))))).)))))))))...----- ( -19.40, z-score = -1.68, R) >droMoj3.scaffold_6473 8581280 94 - 16943266 -------AGGCCAAUAAACAGCGUAAAUAUUUAAGGCGGACCCAAAAGGUCCAU-CCAUCCAUCCGGUUCGGCUUCAUUUAGCUGUUGCGCCGAGCUGAGCU -------...........((((............((.(((((.....)))))..-)).......((((.(((((......)))))....)))).)))).... ( -26.80, z-score = -0.98, R) >consensus AUCAU_AAUACCCUGCAAAAGCGCAGAAACUUGG__CAUAAACGAAUGGCUCAUAUCGUUCAAUUAGGUC_GUAAAAUACAAGUAUUUUGCGGGACA_____ .....................((((((((((((..........((((((......))))))..(((......)))....))))).))))))).......... ( -7.19 = -8.42 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:37 2011