| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,687,497 – 4,687,607 |
| Length | 110 |
| Max. P | 0.862133 |
| Location | 4,687,497 – 4,687,607 |
|---|---|
| Length | 110 |
| Sequences | 10 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 78.36 |
| Shannon entropy | 0.42500 |
| G+C content | 0.47232 |
| Mean single sequence MFE | -30.14 |
| Consensus MFE | -18.36 |
| Energy contribution | -17.60 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4687497 110 - 22422827 ---GCCGUCCCACUCGCACGGCUCUUGCCGUACGUGUCUAUUAUUGGUAUUUGCUGAAUGAAUGGAUUGUACGUGCCCAGAGGCAUUUCGAAUAACUUU-UUUCCAGGCUCCCG ---(((......((((((((((....)))(((((.(((((((.(..((....))..)...))))))))))))))))...))).......(((.......-.)))..)))..... ( -31.00, z-score = -1.53, R) >droSim1.chrX_random 1664333 113 - 5698898 GCCGCCGUCCCACUCGCACGGCUCUUGCCGUACGUGUCUAUUAUUGGUAUUUGCUGAAUGAAUGGAUUGUACGUGCCCAGAGGCAUUUCGAAUAACUUU-UUUCCAGGCUCCCG ((((((.((......(((((((....)))(((((.(((((((.(..((....))..)...))))))))))))))))...))))).....(((.......-.)))..)))..... ( -33.40, z-score = -1.77, R) >droSec1.super_4 4129688 113 + 6179234 GCCGCCGUCCCACUCGCACGGCUCUUGCCGUACGUGUCUAUUAUUGGUAUUUGCUGAAUGAAUGGAUUGUACGUGCCCAGAGGCAUUUCGAAUAACUUU-UUUCCAGGCUCCCG ((((((.((......(((((((....)))(((((.(((((((.(..((....))..)...))))))))))))))))...))))).....(((.......-.)))..)))..... ( -33.40, z-score = -1.77, R) >droYak2.chrX 18013234 110 + 21770863 ---GCCGUCCCACUCGCACGGCGCUUGCCGUACGUGUCUAUUAUUGGUAUUUGCUGAAUGAAUGGAUUGUACGUGCCCAGAGGCAUUUCGAAUAAUUUU-UUUCUAGGCUCCCG ---(((((.(.....).)))))....((((((((.(((((((.(..((....))..)...))))))))))))(((((....))))).............-......)))..... ( -30.50, z-score = -0.98, R) >droEre2.scaffold_4690 2060926 110 - 18748788 ---GCCGUCCCACUCGCACGGCUCUGGCCGUACGUGUCUAUUAUUGGUAUUUGCUGAAUGAAUGGAUUGUACGUGCCCAGAGGCAUUUCGAAUAACUUU-UUUCAUGGCUCCCG ---(((((...........(.(((((((((((((.(((((((.(..((....))..)...))))))))))))).).)))))).).....(((.......-.))))))))..... ( -35.00, z-score = -2.33, R) >droAna3.scaffold_13417 6952820 110 + 6960332 ---GCCGUCUCUUUUGCACGGCUGUUGCCGUACGUGUCUAUUAUUGGUAUUUGCUGAAUGAAUGGAUUGUACGUGCCCGGAGGCAUUUCGAAUAACUUU-UUUUUUUCCUUCUA ---...((((((...(((((((....)))(((((.(((((((.(..((....))..)...))))))))))))))))..))))))...............-.............. ( -32.40, z-score = -3.27, R) >dp4.chrXL_group1a 2064327 106 + 9151740 -------GCUGGCUUUCAUUCUCCGUACCGUACGUGUCUAUUAUUGGUAUUUGCUGAAUGAAUGGAUUGUACGUGCCCGGAGGCAUUUCGAAUAACUUU-UUUUCUUUCUCUCG -------............((((((..(((((((.(((((((.(..((....))..)...))))))))))))).)..))))))................-.............. ( -24.40, z-score = -1.45, R) >droVir3.scaffold_12970 4040408 98 - 11907090 ------------UGUCUCUUUUGCGCAGCGUACGUGUCUAUUAUUGGUAUUUGCUGAAUGAAUGGAUUGUACGUGCCCAAAGGCA-UUCGCAUAUCUUU-GCUCCAUGCAUU-- ------------......(((((.(((.((((((.(((((((.(..((....))..)...)))))))))))))))).)))))(((-(..(((......)-))...))))...-- ( -27.80, z-score = -1.51, R) >droMoj3.scaffold_6473 8580124 101 - 16943266 ----------GCUGUCUCUUUUGCGCAGCGUACGUGUCUAUUAUUGGUAUUUGCUGAAUGAAUGGAUUGUACGUGCCCGAAGGCA-UUCACAUAUCUUUGGCCCCAUGCAAC-- ----------..........(((((((.((((((.(((((((.(..((....))..)...))))))))))))))))((((((..(-(....))..))))))......)))).-- ( -27.60, z-score = -0.87, R) >droGri2.scaffold_15203 2105238 100 + 11997470 ----------CCCGUCUCUCUUACGCAUCGUACGUGUCUAUUAUUGGUAUUUGCUGAAUGAAUGGAUUGUACGUGCCCGAAGGCA-UUCGCAUAUCUUU-GCCCCAUGCAUU-- ----------.........(((..(((.((((((.(((((((.(..((....))..)...))))))))))))))))...)))(((-(..(((......)-))...))))...-- ( -25.90, z-score = -1.46, R) >consensus ___GCCGUCCCACUCGCACGGCUCUUGCCGUACGUGUCUAUUAUUGGUAUUUGCUGAAUGAAUGGAUUGUACGUGCCCAGAGGCAUUUCGAAUAACUUU_UUUCCAGGCUCCCG .............((.............((((((.(((((((.(..((....))..)...)))))))))))))((((....))))....))....................... (-18.36 = -17.60 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:36 2011