| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,683,997 – 4,684,051 |
| Length | 54 |
| Max. P | 0.587401 |
| Location | 4,683,997 – 4,684,051 |
|---|---|
| Length | 54 |
| Sequences | 6 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 66.00 |
| Shannon entropy | 0.58255 |
| G+C content | 0.38586 |
| Mean single sequence MFE | -9.80 |
| Consensus MFE | -5.10 |
| Energy contribution | -5.43 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.86 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.587401 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4683997 54 - 22422827 ---AGCUUGCUGGCCCUUUGGCAGAAUGUUCACACA------UGAACACGAAUAUAUUUAAAG ---...((((..(....)..))))..((((((....------))))))............... ( -9.10, z-score = -0.44, R) >droEre2.scaffold_4840 23675 54 - 184191 ---GCUUUGCUGGCCCUUUGGCAGAAUGUUCACACU------UGAACACGGAUAUACAUAUAA ---..(((((..(....)..))))).((((((....------))))))............... ( -10.50, z-score = -1.01, R) >droAna3.scaffold_13417 4723558 59 - 6960332 ---ACUUUUGUGGCCCCUU-GCAGGAUGUUCAAACAUUAAGUUGAACAUGGGAGCUAAUAAAA ---...(((((((((((..-.....((((((((........))))))))))).))).))))). ( -14.81, z-score = -1.28, R) >dp4.Unknown_group_87 259 51 - 15652 ----CACUUUCGGCCCUUU-GCAGAAUGUUCAAACA------UGAACAUAUGAUCGUCAAUA- ----.......(((.....-.((..(((((((....------))))))).))...)))....- ( -8.30, z-score = -0.80, R) >droPer1.super_340 17250 51 - 19311 ----CACUUUCGGCCCUUU-GCAGAAUGUUCAAACA------UGAACAUAUUAUCGUCAAUA- ----.....((.((.....-)).))(((((((....------))))))).............- ( -7.10, z-score = -0.89, R) >droMoj3.scaffold_6540 27141361 55 - 34148556 AACAUUUUUG-GGCCCCUG-GCAGAAUGUUCAAACA------UGAACAUACAUAAUAAUAAAA ..........-.(((...)-)).(.(((((((....------))))))).)............ ( -9.00, z-score = -0.75, R) >consensus ___ACUUUUCUGGCCCUUU_GCAGAAUGUUCAAACA______UGAACAUAGAAACAUAUAAAA ............((......))...(((((((..........))))))).............. ( -5.10 = -5.43 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:34 2011