| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,114,020 – 10,114,074 |
| Length | 54 |
| Max. P | 0.852029 |
| Location | 10,114,020 – 10,114,074 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 70.80 |
| Shannon entropy | 0.49120 |
| G+C content | 0.35890 |
| Mean single sequence MFE | -11.30 |
| Consensus MFE | -6.37 |
| Energy contribution | -7.17 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.852029 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10114020 54 - 23011544 CCAUA-UUUGAUCUAUUCAACUUUGUUUGGCUAGAAAA-------CACAAGCUGAAUUGGAU .....-....(((((((((.((((((((.......)))-------)).))).)))).))))) ( -9.80, z-score = -1.44, R) >droSim1.chr2L 9905136 54 - 22036055 CCAUA-UUUGAUCUAUUCAACUUUGUUUGGCUAGCAAA-------CACAAGCUGAGUUGGAU .....-........(((((((((.(((((.........-------..))))).))))))))) ( -13.00, z-score = -1.92, R) >droSec1.super_3 5551751 54 - 7220098 CCAUA-UUUGAUCUAUUCAACUUUGUUUGGCUAGCAAA-------CACAAGCUGAGUUGGAU .....-........(((((((((.(((((.........-------..))))).))))))))) ( -13.00, z-score = -1.92, R) >droEre2.scaffold_4929 10729166 62 - 26641161 CCAUGCUUUCAUUUAUUUAACUUUGUUUGGCUGGAAAACACUGCUCACAAGCUCUGUUGGAU (((.(((..((............))...))))))..((((..(((....)))..)))).... ( -10.10, z-score = -0.14, R) >droAna3.scaffold_12916 13947544 51 - 16180835 ACGUU-UUUAACGUAAGCCAAUACGUUAGACAAAC----------GUUAAGCUUUUUAGGAU (((((-(((((((((......)))))))))..)))----------))............... ( -10.60, z-score = -2.12, R) >consensus CCAUA_UUUGAUCUAUUCAACUUUGUUUGGCUAGCAAA_______CACAAGCUGAGUUGGAU ..............(((((((((.(((((..................))))).))))))))) ( -6.37 = -7.17 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:38 2011