| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,673,922 – 4,673,989 |
| Length | 67 |
| Max. P | 0.841924 |
| Location | 4,673,922 – 4,673,989 |
|---|---|
| Length | 67 |
| Sequences | 3 |
| Columns | 67 |
| Reading direction | reverse |
| Mean pairwise identity | 79.79 |
| Shannon entropy | 0.26041 |
| G+C content | 0.28966 |
| Mean single sequence MFE | -10.23 |
| Consensus MFE | -8.84 |
| Energy contribution | -8.40 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.841924 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 4673922 67 - 22422827 GAGCAUAUUUAUAUUUUCGUAUAUAGUGCGAAUAUCAUUUCGUAUUGGAAACUUUCCAUUACCUGCU .((((..........(((((((...))))))).........(((.((((.....)))).))).)))) ( -13.70, z-score = -2.53, R) >droSec1.super_4 4116967 54 + 6179234 GAGCAUAUUUAUAUUUUCGCAUAUAGUACGAGUAUGUUUUCGUAUUGAAAACUU------------- (((((((((..((((.........))))..)))))))))...............------------- ( -8.50, z-score = -0.98, R) >droSim1.chrX 3626618 54 - 17042790 GAGCAUAUUUAUAUUUUCGCAUAUAGUACGAGUAUGUUUUCGUAUUGAAAACUU------------- (((((((((..((((.........))))..)))))))))...............------------- ( -8.50, z-score = -0.98, R) >consensus GAGCAUAUUUAUAUUUUCGCAUAUAGUACGAGUAUGUUUUCGUAUUGAAAACUU_____________ (((.(((....))).))).....(((((((((......))))))))).................... ( -8.84 = -8.40 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:31 2011