| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,668,303 – 4,668,400 |
| Length | 97 |
| Max. P | 0.611249 |
| Location | 4,668,303 – 4,668,400 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 62.28 |
| Shannon entropy | 0.71010 |
| G+C content | 0.38100 |
| Mean single sequence MFE | -20.29 |
| Consensus MFE | -4.47 |
| Energy contribution | -4.67 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.22 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.611249 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4668303 97 + 22422827 ----GAUUGCGAAGGAAUUGAUUAGCUUUAUUAGGCUAGACAAGAAACUGAAGUAGAAAUGAAAGCAUAGACCCUACUUCCCAUAGAUAAAACAUCGAUAC ----.....(((((...(((.(((((((....))))))).)))....))(((((((..(((....))).....)))))))..............))).... ( -17.00, z-score = -1.90, R) >droSim1.chrX 3618341 97 + 17042790 ----GAUUGCGAAGGAGUUGAUUAGCUUUAUUAGGCUAGACAAGAAAGUGAAGUAGAAAUAAAAGCGCAUUCCCUCCUUCCAAUAGAUAAAACAUCGAUAC ----.((((.((((((((((.(((((((....))))))).)))(((.(((...((....))....))).))).))))))))))).(((.....)))..... ( -26.20, z-score = -3.98, R) >droSec1.super_4 4110480 97 - 6179234 ----GAUUGCGAAGGAGUUGAUUAGCUUUAUUAGGCUAGACAAGAAAGUUAAGUAGAAAUGUAAGCGUAACCCCUCCUUCCAAUAGAUAAAACAUCGAUAC ----.((((.(((((((.......((((((((..(((.(((......))).)))...)))).)))).......))))))))))).(((.....)))..... ( -22.54, z-score = -2.87, R) >droYak2.chrX 17994659 84 - 21770863 ----GAUUGCGAAGGAAUUGAUUAGUUUUAUUAGACUGGACAACAAACUGAAAUUGAUGUUCAAGUGAAAGUGUAUCCCCUGCGAUGC------------- ----.((((((..(((......((.(((((((....((((((.(((.......))).))))))))))))).))..)))..))))))..------------- ( -16.50, z-score = -1.18, R) >droEre2.scaffold_4690 2043639 94 + 18748788 ----GAUUGCGAGCGCAUUGAUUAGUUUUAUUAGACUAGACAAGAAACGGAAGUAGAAAUGCUAGUGUAUCCG---CUUCCAACAGAGGAAACAUCGAUAC ----..(((.(((((..(((.(((((((....))))))).)))((.(((..((((....))))..))).))))---))).)))..(((....).))..... ( -22.00, z-score = -2.18, R) >droGri2.scaffold_15203 2087416 88 - 11997470 AUUCUGUUAUGAAUGAGCUGCUU--UUCGAUUAUGUGAAACUUGGUAAU--AGUAAAUGUGGGACUCUAGCCCAUAUCAACACCGGACCGAU--------- .(((...(((((.((((......--)))).))))).)))..(((((...--.((..(((((((.(....))))))))..)).....))))).--------- ( -17.50, z-score = -0.29, R) >consensus ____GAUUGCGAAGGAAUUGAUUAGCUUUAUUAGGCUAGACAAGAAACUGAAGUAGAAAUGAAAGCGUAACCCCUACUUCCAAUAGAUAAAACAUCGAUAC ......((((.......(((.(((((((....))))))).))).........))))............................................. ( -4.47 = -4.67 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:29 2011